miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 160378 0.69 0.623897
Target:  5'- cGUCGuGGCUC-UCUGCgGCUCGCGuucGCGu -3'
miRNA:   3'- -CAGC-UCGAGcGGACGgCGAGCGU---CGC- -5'
13979 5' -61.4 NC_003521.1 + 175091 0.69 0.623897
Target:  5'- cGUCGAuGCccuuuUUGCCggccaggGCCGC-CGCGGCGc -3'
miRNA:   3'- -CAGCU-CG-----AGCGGa------CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 45044 0.68 0.633538
Target:  5'- gGUCGAGa--GCCgcGCCGCUCGUgccaGGCa -3'
miRNA:   3'- -CAGCUCgagCGGa-CGGCGAGCG----UCGc -5'
13979 5' -61.4 NC_003521.1 + 192793 0.68 0.643178
Target:  5'- -aCGGGCUUGCCcuUGUcggauCGCUgGCAGCa -3'
miRNA:   3'- caGCUCGAGCGG--ACG-----GCGAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 87943 0.68 0.643178
Target:  5'- -aCGAGCUgcgCGaCCUGCUGacacgcuacgcCUCGCGGCGc -3'
miRNA:   3'- caGCUCGA---GC-GGACGGC-----------GAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 95768 0.68 0.651848
Target:  5'- -cCGAGC-CGCCcagacggucaucgUGCCGCUCGgccacgcgacCAGCGc -3'
miRNA:   3'- caGCUCGaGCGG-------------ACGGCGAGC----------GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 171637 0.68 0.65281
Target:  5'- cGUCGGGUaUGUCUaGCgCGC-CGCGGCGg -3'
miRNA:   3'- -CAGCUCGaGCGGA-CG-GCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 216320 0.68 0.65281
Target:  5'- uGUCGGGaaaGag-GCCGCUCGUAGCGc -3'
miRNA:   3'- -CAGCUCgagCggaCGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 100888 0.68 0.662428
Target:  5'- -aCGAGCUgGCCUuccgGCCGUgccccgaggaGCAGCGc -3'
miRNA:   3'- caGCUCGAgCGGA----CGGCGag--------CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 169296 0.68 0.662428
Target:  5'- -gCGGGCUCggugacgucgGCCggcGUCGgUCGCAGCGu -3'
miRNA:   3'- caGCUCGAG----------CGGa--CGGCgAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 36788 0.68 0.662428
Target:  5'- --aGGGCcacgCGCUgcggaGCCGCUCGCGGaCGg -3'
miRNA:   3'- cagCUCGa---GCGGa----CGGCGAGCGUC-GC- -5'
13979 5' -61.4 NC_003521.1 + 12165 0.68 0.662428
Target:  5'- -gCGGGUg-GCUUGUCGCuaUCGCGGCGa -3'
miRNA:   3'- caGCUCGagCGGACGGCG--AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 97627 0.68 0.672024
Target:  5'- cGUCGuGCUCagGCUcGaCGUUCGCGGCGg -3'
miRNA:   3'- -CAGCuCGAG--CGGaCgGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 196288 0.68 0.672024
Target:  5'- -gUGAGCgcgUGCCggGCCGCUugaugcuggccaUGCAGCGc -3'
miRNA:   3'- caGCUCGa--GCGGa-CGGCGA------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 152340 0.68 0.678724
Target:  5'- uUCGGGCccgCGCCgacGCUGCUCuggggccggccgggGCGGCGc -3'
miRNA:   3'- cAGCUCGa--GCGGa--CGGCGAG--------------CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 225778 0.68 0.681591
Target:  5'- cUCGcGCUCGC--GCCGCUCGuCAGgGu -3'
miRNA:   3'- cAGCuCGAGCGgaCGGCGAGC-GUCgC- -5'
13979 5' -61.4 NC_003521.1 + 153445 0.67 0.691122
Target:  5'- gGUCGcGCUCguagGCCaGCgGCUCGCAGg- -3'
miRNA:   3'- -CAGCuCGAG----CGGaCGgCGAGCGUCgc -5'
13979 5' -61.4 NC_003521.1 + 116360 0.67 0.691122
Target:  5'- -gCGAGCgcggcggcgaaCGCgUGCCGC-CGCGGCc -3'
miRNA:   3'- caGCUCGa----------GCGgACGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 110825 0.67 0.691122
Target:  5'- -cCGuuGCgCGCC-GCCGCcggCGCAGCGg -3'
miRNA:   3'- caGCu-CGaGCGGaCGGCGa--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 198821 0.67 0.694923
Target:  5'- uGUCGuGC-CGCCguguUGCUGCUgcgaccuuaagaaggCGCGGCGg -3'
miRNA:   3'- -CAGCuCGaGCGG----ACGGCGA---------------GCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.