miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 185057 0.69 0.604638
Target:  5'- uUCGAGCUguacCGCCgGCCGCgccugUCGCuGCc -3'
miRNA:   3'- cAGCUCGA----GCGGaCGGCG-----AGCGuCGc -5'
13979 5' -61.4 NC_003521.1 + 155435 0.69 0.604638
Target:  5'- -gCGAGCUgGCCgacCCGCugggcgagUCGCAGCa -3'
miRNA:   3'- caGCUCGAgCGGac-GGCG--------AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 111272 0.69 0.595033
Target:  5'- cGUCGGGCcCGCCgUGCCaGCgcCGCcGCGa -3'
miRNA:   3'- -CAGCUCGaGCGG-ACGG-CGa-GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 181883 0.69 0.595033
Target:  5'- -gCGAGCUCGCCgaUGaCGUUCGUGGUa -3'
miRNA:   3'- caGCUCGAGCGG--ACgGCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 211058 0.69 0.5759
Target:  5'- -cUGAcCUCGUUcGUCGCUCGCGGCGa -3'
miRNA:   3'- caGCUcGAGCGGaCGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 103513 0.69 0.5759
Target:  5'- cUCGGGgUCGCCgcgcagcaGCCGCgccaccCGCAGCu -3'
miRNA:   3'- cAGCUCgAGCGGa-------CGGCGa-----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 135334 0.69 0.574947
Target:  5'- gGUCGGGCgggUUGCCUcccucccgcgcgcGCCGuCUCcGCGGCGg -3'
miRNA:   3'- -CAGCUCG---AGCGGA-------------CGGC-GAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 101366 0.69 0.574947
Target:  5'- gGUCGAGUUC-CgCUGCCGCuacaccuUCGCGcGCGa -3'
miRNA:   3'- -CAGCUCGAGcG-GACGGCG-------AGCGU-CGC- -5'
13979 5' -61.4 NC_003521.1 + 166456 0.7 0.566384
Target:  5'- -gCGAGCcgUCGCCgcacugGCCGUagccgCGCAGCa -3'
miRNA:   3'- caGCUCG--AGCGGa-----CGGCGa----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 167580 0.7 0.55691
Target:  5'- cGUCGucacGC-CGCUgcuguUGCCGCUCGUGGUGg -3'
miRNA:   3'- -CAGCu---CGaGCGG-----ACGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 88403 0.7 0.55691
Target:  5'- cGUCGAGCUCaUCUGCaacCGCgagaaggCGCGGCa -3'
miRNA:   3'- -CAGCUCGAGcGGACG---GCGa------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 226617 0.7 0.547481
Target:  5'- cGUCagGGGCUCGCCgcaGCacaccagcuUGCUCGCGGCc -3'
miRNA:   3'- -CAG--CUCGAGCGGa--CG---------GCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 25088 0.7 0.528781
Target:  5'- cGUCGGGCUC-CUUGCUGC-CGCuuAGCa -3'
miRNA:   3'- -CAGCUCGAGcGGACGGCGaGCG--UCGc -5'
13979 5' -61.4 NC_003521.1 + 179705 0.7 0.528781
Target:  5'- uGUUGGGCUucacCGUCUcGCCGCUCaGCuGCGa -3'
miRNA:   3'- -CAGCUCGA----GCGGA-CGGCGAG-CGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 69849 0.7 0.519519
Target:  5'- gGUCGAuGacgCGCCgaugagGCCGCcgCGCAGCGc -3'
miRNA:   3'- -CAGCU-Cga-GCGGa-----CGGCGa-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 171198 0.71 0.510322
Target:  5'- -cCGAGCUggUGCaCUGCuCGCUCuGCGGCa -3'
miRNA:   3'- caGCUCGA--GCG-GACG-GCGAG-CGUCGc -5'
13979 5' -61.4 NC_003521.1 + 112962 0.71 0.510322
Target:  5'- -cCGAGaugCGCUacuacaUGCCGCUCaGCGGCGg -3'
miRNA:   3'- caGCUCga-GCGG------ACGGCGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 135728 0.71 0.501194
Target:  5'- cUCGcGCUCGCC-GCUGCUacUGCGGUGg -3'
miRNA:   3'- cAGCuCGAGCGGaCGGCGA--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 224316 0.71 0.492138
Target:  5'- -cCGAGCcgagCGCCgcaGCCcguGCUCGUAGCGu -3'
miRNA:   3'- caGCUCGa---GCGGa--CGG---CGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 56138 0.71 0.492138
Target:  5'- cGUCGGGCgagugCgGCUcgUGCUGCUCGCuGCGc -3'
miRNA:   3'- -CAGCUCGa----G-CGG--ACGGCGAGCGuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.