miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 192793 0.68 0.643178
Target:  5'- -aCGGGCUUGCCcuUGUcggauCGCUgGCAGCa -3'
miRNA:   3'- caGCUCGAGCGG--ACG-----GCGAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 186933 0.67 0.728735
Target:  5'- -aCGAGCgCGUgaCUGUCGUUgCGCAGCa -3'
miRNA:   3'- caGCUCGaGCG--GACGGCGA-GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 185580 0.8 0.137716
Target:  5'- -gCGGGCUCGCCggcgaGCCGCUCGgGGCu -3'
miRNA:   3'- caGCUCGAGCGGa----CGGCGAGCgUCGc -5'
13979 5' -61.4 NC_003521.1 + 185057 0.69 0.604638
Target:  5'- uUCGAGCUguacCGCCgGCCGCgccugUCGCuGCc -3'
miRNA:   3'- cAGCUCGA----GCGGaCGGCG-----AGCGuCGc -5'
13979 5' -61.4 NC_003521.1 + 181883 0.69 0.595033
Target:  5'- -gCGAGCUCGCCgaUGaCGUUCGUGGUa -3'
miRNA:   3'- caGCUCGAGCGG--ACgGCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 181385 0.73 0.390252
Target:  5'- cUCGAGCUCG-CUGCCGgCg-GCGGCGc -3'
miRNA:   3'- cAGCUCGAGCgGACGGC-GagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 179705 0.7 0.528781
Target:  5'- uGUUGGGCUucacCGUCUcGCCGCUCaGCuGCGa -3'
miRNA:   3'- -CAGCUCGA----GCGGA-CGGCGAG-CGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 175091 0.69 0.623897
Target:  5'- cGUCGAuGCccuuuUUGCCggccaggGCCGC-CGCGGCGc -3'
miRNA:   3'- -CAGCU-CG-----AGCGGa------CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 174458 0.66 0.782777
Target:  5'- uGUCGcuGCUCGCC-GCCGgccaCGCgAGCGg -3'
miRNA:   3'- -CAGCu-CGAGCGGaCGGCga--GCG-UCGC- -5'
13979 5' -61.4 NC_003521.1 + 172312 0.73 0.390252
Target:  5'- uGUCG-GUggCGCCagGCCGgUCGCGGCGg -3'
miRNA:   3'- -CAGCuCGa-GCGGa-CGGCgAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 171637 0.68 0.65281
Target:  5'- cGUCGGGUaUGUCUaGCgCGC-CGCGGCGg -3'
miRNA:   3'- -CAGCUCGaGCGGA-CG-GCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 171198 0.71 0.510322
Target:  5'- -cCGAGCUggUGCaCUGCuCGCUCuGCGGCa -3'
miRNA:   3'- caGCUCGA--GCG-GACG-GCGAG-CGUCGc -5'
13979 5' -61.4 NC_003521.1 + 170981 0.66 0.774026
Target:  5'- aUCGgcAGCgucaUCGaCCUGCCGCUCuGguGCc -3'
miRNA:   3'- cAGC--UCG----AGC-GGACGGCGAG-CguCGc -5'
13979 5' -61.4 NC_003521.1 + 169296 0.68 0.662428
Target:  5'- -gCGGGCUCggugacgucgGCCggcGUCGgUCGCAGCGu -3'
miRNA:   3'- caGCUCGAG----------CGGa--CGGCgAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 167580 0.7 0.55691
Target:  5'- cGUCGucacGC-CGCUgcuguUGCCGCUCGUGGUGg -3'
miRNA:   3'- -CAGCu---CGaGCGG-----ACGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 167519 0.66 0.774026
Target:  5'- aGUCGAgcagccaggucuGCUCGgcguCCUGCCGCagGCAGa- -3'
miRNA:   3'- -CAGCU------------CGAGC----GGACGGCGagCGUCgc -5'
13979 5' -61.4 NC_003521.1 + 167461 0.66 0.756193
Target:  5'- -aUGAGCgUGCUgaggGCCGUgCGCGGCGc -3'
miRNA:   3'- caGCUCGaGCGGa---CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 166635 0.8 0.144564
Target:  5'- cGUCGGGCcgcgCGCCgggcGCCGCggCGCAGCGg -3'
miRNA:   3'- -CAGCUCGa---GCGGa---CGGCGa-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 166456 0.7 0.566384
Target:  5'- -gCGAGCcgUCGCCgcacugGCCGUagccgCGCAGCa -3'
miRNA:   3'- caGCUCG--AGCGGa-----CGGCGa----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 163135 0.66 0.782777
Target:  5'- cUCGGGCaUCuGUCUGCC-CUCGUcccugAGCGg -3'
miRNA:   3'- cAGCUCG-AG-CGGACGGcGAGCG-----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.