miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 160378 0.69 0.623897
Target:  5'- cGUCGuGGCUC-UCUGCgGCUCGCGuucGCGu -3'
miRNA:   3'- -CAGC-UCGAGcGGACGgCGAGCGU---CGC- -5'
13979 5' -61.4 NC_003521.1 + 157971 0.66 0.791408
Target:  5'- -aCGGcGCUgguagcgaCGCC-GCCGCcCGCGGCGa -3'
miRNA:   3'- caGCU-CGA--------GCGGaCGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 155435 0.69 0.604638
Target:  5'- -gCGAGCUgGCCgacCCGCugggcgagUCGCAGCa -3'
miRNA:   3'- caGCUCGAgCGGac-GGCG--------AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 153500 0.66 0.774026
Target:  5'- -gCGcAGCUgCGCCUccaGgCGCUCGCuGCGc -3'
miRNA:   3'- caGC-UCGA-GCGGA---CgGCGAGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 153445 0.67 0.691122
Target:  5'- gGUCGcGCUCguagGCCaGCgGCUCGCAGg- -3'
miRNA:   3'- -CAGCuCGAG----CGGaCGgCGAGCGUCgc -5'
13979 5' -61.4 NC_003521.1 + 152340 0.68 0.678724
Target:  5'- uUCGGGCccgCGCCgacGCUGCUCuggggccggccgggGCGGCGc -3'
miRNA:   3'- cAGCUCGa--GCGGa--CGGCGAG--------------CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 145874 0.67 0.728735
Target:  5'- -gCGGGCggCGCCgacgacgagGCCGC-CGgCGGCGg -3'
miRNA:   3'- caGCUCGa-GCGGa--------CGGCGaGC-GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 144283 0.66 0.756193
Target:  5'- -gCGAGCacggcgacUCGCugCUGCCGCacgCGCuGCGg -3'
miRNA:   3'- caGCUCG--------AGCG--GACGGCGa--GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 142560 0.67 0.727807
Target:  5'- uGUCGcccgccaGGCUCGCCgUGcCCGC-CGUGGCc -3'
miRNA:   3'- -CAGC-------UCGAGCGG-AC-GGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 142341 0.66 0.782777
Target:  5'- -gCGAgGC-CGCCgccacgGCCGC-CGCGGCc -3'
miRNA:   3'- caGCU-CGaGCGGa-----CGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 142279 0.73 0.359478
Target:  5'- cUCGGGCUgggaccCGCC-GCCGCU-GCAGCGg -3'
miRNA:   3'- cAGCUCGA------GCGGaCGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 138031 0.66 0.791408
Target:  5'- -cCGAGCUggcggcCGCCggcGCCGUcaucgCGCAGCc -3'
miRNA:   3'- caGCUCGA------GCGGa--CGGCGa----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 137309 0.66 0.746216
Target:  5'- -gCGAGUucgcgCGCCUGCUGCugggcucgcccuuUCGcCAGCGc -3'
miRNA:   3'- caGCUCGa----GCGGACGGCG-------------AGC-GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 137302 0.66 0.774026
Target:  5'- -gCGGGUggCGCg-GCUGCUgCGCGGCGa -3'
miRNA:   3'- caGCUCGa-GCGgaCGGCGA-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 137146 0.72 0.406271
Target:  5'- cUCGGaCUCGCCcgccaugGCCGCggcCGCAGCGg -3'
miRNA:   3'- cAGCUcGAGCGGa------CGGCGa--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 135728 0.71 0.501194
Target:  5'- cUCGcGCUCGCC-GCUGCUacUGCGGUGg -3'
miRNA:   3'- cAGCuCGAGCGGaCGGCGA--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 135334 0.69 0.574947
Target:  5'- gGUCGGGCgggUUGCCUcccucccgcgcgcGCCGuCUCcGCGGCGg -3'
miRNA:   3'- -CAGCUCG---AGCGGA-------------CGGC-GAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 135208 0.67 0.737972
Target:  5'- -cCGAGCaCGcCCUGCUGCagCGCcugAGCGg -3'
miRNA:   3'- caGCUCGaGC-GGACGGCGa-GCG---UCGC- -5'
13979 5' -61.4 NC_003521.1 + 129825 0.67 0.728735
Target:  5'- -cUGGGC-CGCCUGCUGCUggggccCGUGGCc -3'
miRNA:   3'- caGCUCGaGCGGACGGCGA------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 129618 0.71 0.492138
Target:  5'- aGUCGAG-UCGCCgGCCGC-C-CGGCGg -3'
miRNA:   3'- -CAGCUCgAGCGGaCGGCGaGcGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.