miRNA display CGI


Results 61 - 80 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 129415 0.66 0.747128
Target:  5'- cUCGGGgUCGUC-GCCGUaguagaugCGCAGCGc -3'
miRNA:   3'- cAGCUCgAGCGGaCGGCGa-------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 127835 0.66 0.756193
Target:  5'- -cCGGGUgguaguggCGCCcGCCGCUgaGCGGCa -3'
miRNA:   3'- caGCUCGa-------GCGGaCGGCGAg-CGUCGc -5'
13979 5' -61.4 NC_003521.1 + 126980 0.66 0.747128
Target:  5'- cGUCGccGGC-CGCCccgcUGCCGCUgcccgaCGUGGCGg -3'
miRNA:   3'- -CAGC--UCGaGCGG----ACGGCGA------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 126832 0.67 0.733363
Target:  5'- -gCGuGCUCGCCcacgaacUGCaccgccaggaacaGCUCGCGGCa -3'
miRNA:   3'- caGCuCGAGCGG-------ACGg------------CGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 124467 0.66 0.747128
Target:  5'- -aCGcGUUCGCC-GCCGCgcUCGCGGUc -3'
miRNA:   3'- caGCuCGAGCGGaCGGCG--AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 122843 0.66 0.766053
Target:  5'- cGUCGcgcAGCUCGUCguagcgcuggugcugGCCGC-CGCcGCGa -3'
miRNA:   3'- -CAGC---UCGAGCGGa--------------CGGCGaGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 119897 0.67 0.700609
Target:  5'- --gGAGC-CGCC-GCCGCggGCAGCc -3'
miRNA:   3'- cagCUCGaGCGGaCGGCGagCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 116360 0.67 0.691122
Target:  5'- -gCGAGCgcggcggcgaaCGCgUGCCGC-CGCGGCc -3'
miRNA:   3'- caGCUCGa----------GCGgACGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 114928 0.69 0.614262
Target:  5'- cUCGAGCggcUGCUggagaGCUGCUCGCgcAGCGg -3'
miRNA:   3'- cAGCUCGa--GCGGa----CGGCGAGCG--UCGC- -5'
13979 5' -61.4 NC_003521.1 + 113383 0.66 0.756193
Target:  5'- -aCGgccAGCUgGCCgacgaGCCGCUgGCGGCc -3'
miRNA:   3'- caGC---UCGAgCGGa----CGGCGAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 112962 0.71 0.510322
Target:  5'- -cCGAGaugCGCUacuacaUGCCGCUCaGCGGCGg -3'
miRNA:   3'- caGCUCga-GCGG------ACGGCGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 111272 0.69 0.595033
Target:  5'- cGUCGGGCcCGCCgUGCCaGCgcCGCcGCGa -3'
miRNA:   3'- -CAGCUCGaGCGG-ACGG-CGa-GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 110825 0.67 0.691122
Target:  5'- -cCGuuGCgCGCC-GCCGCcggCGCAGCGg -3'
miRNA:   3'- caGCu-CGaGCGGaCGGCGa--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 109988 0.66 0.791408
Target:  5'- --aGGGCg-GCCUGCCGgUC-CAGCa -3'
miRNA:   3'- cagCUCGagCGGACGGCgAGcGUCGc -5'
13979 5' -61.4 NC_003521.1 + 104682 0.66 0.791408
Target:  5'- --gGAGCUCGaggggGCCGUggGCGGCGu -3'
miRNA:   3'- cagCUCGAGCgga--CGGCGagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 104139 0.71 0.483158
Target:  5'- cUCGGGCcCGcCCUGCUcgguGCUCuGCGGCGg -3'
miRNA:   3'- cAGCUCGaGC-GGACGG----CGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 103513 0.69 0.5759
Target:  5'- cUCGGGgUCGCCgcgcagcaGCCGCgccaccCGCAGCu -3'
miRNA:   3'- cAGCUCgAGCGGa-------CGGCGa-----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 103437 0.66 0.774026
Target:  5'- uGUCGAcGCgCGUCUGCaccaGUUCGCGuccGCGg -3'
miRNA:   3'- -CAGCU-CGaGCGGACGg---CGAGCGU---CGC- -5'
13979 5' -61.4 NC_003521.1 + 102751 0.66 0.774026
Target:  5'- --aGGGCcagCGCCUcaGCUGUcCGCGGCGg -3'
miRNA:   3'- cagCUCGa--GCGGA--CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 101382 0.66 0.774026
Target:  5'- -gCGAGC-CGUCgcGCCGCUUGaCGGCc -3'
miRNA:   3'- caGCUCGaGCGGa-CGGCGAGC-GUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.