Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13979 | 5' | -61.4 | NC_003521.1 | + | 45044 | 0.68 | 0.633538 |
Target: 5'- gGUCGAGa--GCCgcGCCGCUCGUgccaGGCa -3' miRNA: 3'- -CAGCUCgagCGGa-CGGCGAGCG----UCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 104139 | 0.71 | 0.483158 |
Target: 5'- cUCGGGCcCGcCCUGCUcgguGCUCuGCGGCGg -3' miRNA: 3'- cAGCUCGaGC-GGACGG----CGAG-CGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 1446 | 0.71 | 0.46544 |
Target: 5'- -gCGAGCUgCGCC-GCCGgUgGCAGCa -3' miRNA: 3'- caGCUCGA-GCGGaCGGCgAgCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 197870 | 0.72 | 0.431058 |
Target: 5'- gGUCGcGCUCGCUggGCUGCagGCGGCa -3' miRNA: 3'- -CAGCuCGAGCGGa-CGGCGagCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 181385 | 0.73 | 0.390252 |
Target: 5'- cUCGAGCUCG-CUGCCGgCg-GCGGCGc -3' miRNA: 3'- cAGCUCGAGCgGACGGC-GagCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 172312 | 0.73 | 0.390252 |
Target: 5'- uGUCG-GUggCGCCagGCCGgUCGCGGCGg -3' miRNA: 3'- -CAGCuCGa-GCGGa-CGGCgAGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 58955 | 0.74 | 0.34474 |
Target: 5'- -gCGAGCUCGCCgagggGUCGUgCGUGGCGa -3' miRNA: 3'- caGCUCGAGCGGa----CGGCGaGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 166635 | 0.8 | 0.144564 |
Target: 5'- cGUCGGGCcgcgCGCCgggcGCCGCggCGCAGCGg -3' miRNA: 3'- -CAGCUCGa---GCGGa---CGGCGa-GCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 185580 | 0.8 | 0.137716 |
Target: 5'- -gCGGGCUCGCCggcgaGCCGCUCGgGGCu -3' miRNA: 3'- caGCUCGAGCGGa----CGGCGAGCgUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 198756 | 0.71 | 0.492138 |
Target: 5'- -cCGuGCUCGCUggucgcGCCGCUCGUGGgCGa -3' miRNA: 3'- caGCuCGAGCGGa-----CGGCGAGCGUC-GC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 135728 | 0.71 | 0.501194 |
Target: 5'- cUCGcGCUCGCC-GCUGCUacUGCGGUGg -3' miRNA: 3'- cAGCuCGAGCGGaCGGCGA--GCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 171198 | 0.71 | 0.510322 |
Target: 5'- -cCGAGCUggUGCaCUGCuCGCUCuGCGGCa -3' miRNA: 3'- caGCUCGA--GCG-GACG-GCGAG-CGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 175091 | 0.69 | 0.623897 |
Target: 5'- cGUCGAuGCccuuuUUGCCggccaggGCCGC-CGCGGCGc -3' miRNA: 3'- -CAGCU-CG-----AGCGGa------CGGCGaGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 185057 | 0.69 | 0.604638 |
Target: 5'- uUCGAGCUguacCGCCgGCCGCgccugUCGCuGCc -3' miRNA: 3'- cAGCUCGA----GCGGaCGGCG-----AGCGuCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 111272 | 0.69 | 0.595033 |
Target: 5'- cGUCGGGCcCGCCgUGCCaGCgcCGCcGCGa -3' miRNA: 3'- -CAGCUCGaGCGG-ACGG-CGa-GCGuCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 103513 | 0.69 | 0.5759 |
Target: 5'- cUCGGGgUCGCCgcgcagcaGCCGCgccaccCGCAGCu -3' miRNA: 3'- cAGCUCgAGCGGa-------CGGCGa-----GCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 101366 | 0.69 | 0.574947 |
Target: 5'- gGUCGAGUUC-CgCUGCCGCuacaccuUCGCGcGCGa -3' miRNA: 3'- -CAGCUCGAGcG-GACGGCG-------AGCGU-CGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 88403 | 0.7 | 0.55691 |
Target: 5'- cGUCGAGCUCaUCUGCaacCGCgagaaggCGCGGCa -3' miRNA: 3'- -CAGCUCGAGcGGACG---GCGa------GCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 179705 | 0.7 | 0.528781 |
Target: 5'- uGUUGGGCUucacCGUCUcGCCGCUCaGCuGCGa -3' miRNA: 3'- -CAGCUCGA----GCGGA-CGGCGAG-CGuCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 25088 | 0.7 | 0.528781 |
Target: 5'- cGUCGGGCUC-CUUGCUGC-CGCuuAGCa -3' miRNA: 3'- -CAGCUCGAGcGGACGGCGaGCG--UCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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