miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 58955 0.74 0.34474
Target:  5'- -gCGAGCUCGCCgagggGUCGUgCGUGGCGa -3'
miRNA:   3'- caGCUCGAGCGGa----CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 166635 0.8 0.144564
Target:  5'- cGUCGGGCcgcgCGCCgggcGCCGCggCGCAGCGg -3'
miRNA:   3'- -CAGCUCGa---GCGGa---CGGCGa-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 185580 0.8 0.137716
Target:  5'- -gCGGGCUCGCCggcgaGCCGCUCGgGGCu -3'
miRNA:   3'- caGCUCGAGCGGa----CGGCGAGCgUCGc -5'
13979 5' -61.4 NC_003521.1 + 88403 0.7 0.55691
Target:  5'- cGUCGAGCUCaUCUGCaacCGCgagaaggCGCGGCa -3'
miRNA:   3'- -CAGCUCGAGcGGACG---GCGa------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 101366 0.69 0.574947
Target:  5'- gGUCGAGUUC-CgCUGCCGCuacaccuUCGCGcGCGa -3'
miRNA:   3'- -CAGCUCGAGcG-GACGGCG-------AGCGU-CGC- -5'
13979 5' -61.4 NC_003521.1 + 97627 0.68 0.672024
Target:  5'- cGUCGuGCUCagGCUcGaCGUUCGCGGCGg -3'
miRNA:   3'- -CAGCuCGAG--CGGaCgGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 169296 0.68 0.662428
Target:  5'- -gCGGGCUCggugacgucgGCCggcGUCGgUCGCAGCGu -3'
miRNA:   3'- caGCUCGAG----------CGGa--CGGCgAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 100888 0.68 0.662428
Target:  5'- -aCGAGCUgGCCUuccgGCCGUgccccgaggaGCAGCGc -3'
miRNA:   3'- caGCUCGAgCGGA----CGGCGag--------CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 12165 0.68 0.662428
Target:  5'- -gCGGGUg-GCUUGUCGCuaUCGCGGCGa -3'
miRNA:   3'- caGCUCGagCGGACGGCG--AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 36788 0.68 0.662428
Target:  5'- --aGGGCcacgCGCUgcggaGCCGCUCGCGGaCGg -3'
miRNA:   3'- cagCUCGa---GCGGa----CGGCGAGCGUC-GC- -5'
13979 5' -61.4 NC_003521.1 + 171637 0.68 0.65281
Target:  5'- cGUCGGGUaUGUCUaGCgCGC-CGCGGCGg -3'
miRNA:   3'- -CAGCUCGaGCGGA-CG-GCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 95768 0.68 0.651848
Target:  5'- -cCGAGC-CGCCcagacggucaucgUGCCGCUCGgccacgcgacCAGCGc -3'
miRNA:   3'- caGCUCGaGCGG-------------ACGGCGAGC----------GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 87943 0.68 0.643178
Target:  5'- -aCGAGCUgcgCGaCCUGCUGacacgcuacgcCUCGCGGCGc -3'
miRNA:   3'- caGCUCGA---GC-GGACGGC-----------GAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 45044 0.68 0.633538
Target:  5'- gGUCGAGa--GCCgcGCCGCUCGUgccaGGCa -3'
miRNA:   3'- -CAGCUCgagCGGa-CGGCGAGCG----UCGc -5'
13979 5' -61.4 NC_003521.1 + 175091 0.69 0.623897
Target:  5'- cGUCGAuGCccuuuUUGCCggccaggGCCGC-CGCGGCGc -3'
miRNA:   3'- -CAGCU-CG-----AGCGGa------CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 185057 0.69 0.604638
Target:  5'- uUCGAGCUguacCGCCgGCCGCgccugUCGCuGCc -3'
miRNA:   3'- cAGCUCGA----GCGGaCGGCG-----AGCGuCGc -5'
13979 5' -61.4 NC_003521.1 + 111272 0.69 0.595033
Target:  5'- cGUCGGGCcCGCCgUGCCaGCgcCGCcGCGa -3'
miRNA:   3'- -CAGCUCGaGCGG-ACGG-CGa-GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 103513 0.69 0.5759
Target:  5'- cUCGGGgUCGCCgcgcagcaGCCGCgccaccCGCAGCu -3'
miRNA:   3'- cAGCUCgAGCGGa-------CGGCGa-----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 205171 1.07 0.00196
Target:  5'- aGUCGAGCUCGCCUGCCGCUCGCAGCGc -3'
miRNA:   3'- -CAGCUCGAGCGGACGGCGAGCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.