miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 8335 0.67 0.728735
Target:  5'- cGUUGAGCUUgacgaaGCUgggGUagCGCUCGCAGCc -3'
miRNA:   3'- -CAGCUCGAG------CGGa--CG--GCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 45044 0.68 0.633538
Target:  5'- gGUCGAGa--GCCgcGCCGCUCGUgccaGGCa -3'
miRNA:   3'- -CAGCUCgagCGGa-CGGCGAGCG----UCGc -5'
13979 5' -61.4 NC_003521.1 + 181385 0.73 0.390252
Target:  5'- cUCGAGCUCG-CUGCCGgCg-GCGGCGc -3'
miRNA:   3'- cAGCUCGAGCgGACGGC-GagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 88144 0.67 0.719424
Target:  5'- -cCGAGC-CGCUggagcgGCUGCUgaCGCAGCu -3'
miRNA:   3'- caGCUCGaGCGGa-----CGGCGA--GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 172312 0.73 0.390252
Target:  5'- uGUCG-GUggCGCCagGCCGgUCGCGGCGg -3'
miRNA:   3'- -CAGCuCGa-GCGGa-CGGCgAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 2306 0.66 0.791408
Target:  5'- -aCGAGCUCucgcaCCUGCUGCgCGcCGGCc -3'
miRNA:   3'- caGCUCGAGc----GGACGGCGaGC-GUCGc -5'
13979 5' -61.4 NC_003521.1 + 1446 0.71 0.46544
Target:  5'- -gCGAGCUgCGCC-GCCGgUgGCAGCa -3'
miRNA:   3'- caGCUCGA-GCGGaCGGCgAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 174458 0.66 0.782777
Target:  5'- uGUCGcuGCUCGCC-GCCGgccaCGCgAGCGg -3'
miRNA:   3'- -CAGCu-CGAGCGGaCGGCga--GCG-UCGC- -5'
13979 5' -61.4 NC_003521.1 + 40396 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 122843 0.66 0.766053
Target:  5'- cGUCGcgcAGCUCGUCguagcgcuggugcugGCCGC-CGCcGCGa -3'
miRNA:   3'- -CAGC---UCGAGCGGa--------------CGGCGaGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 16567 0.66 0.765162
Target:  5'- --aGGGCgcgCGCCUGCauuucaccaUGUUCGaCAGCGg -3'
miRNA:   3'- cagCUCGa--GCGGACG---------GCGAGC-GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 113383 0.66 0.756193
Target:  5'- -aCGgccAGCUgGCCgacgaGCCGCUgGCGGCc -3'
miRNA:   3'- caGC---UCGAgCGGa----CGGCGAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 208660 0.67 0.737972
Target:  5'- uUCGAuggaacaacGCgggCGCCUuccGCCGCUUGguGCa -3'
miRNA:   3'- cAGCU---------CGa--GCGGA---CGGCGAGCguCGc -5'
13979 5' -61.4 NC_003521.1 + 198821 0.67 0.694923
Target:  5'- uGUCGuGC-CGCCguguUGCUGCUgcgaccuuaagaaggCGCGGCGg -3'
miRNA:   3'- -CAGCuCGaGCGG----ACGGCGA---------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 196288 0.68 0.672024
Target:  5'- -gUGAGCgcgUGCCggGCCGCUugaugcuggccaUGCAGCGc -3'
miRNA:   3'- caGCUCGa--GCGGa-CGGCGA------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 12165 0.68 0.662428
Target:  5'- -gCGGGUg-GCUUGUCGCuaUCGCGGCGa -3'
miRNA:   3'- caGCUCGagCGGACGGCG--AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 95768 0.68 0.651848
Target:  5'- -cCGAGC-CGCCcagacggucaucgUGCCGCUCGgccacgcgacCAGCGc -3'
miRNA:   3'- caGCUCGaGCGG-------------ACGGCGAGC----------GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 111272 0.69 0.595033
Target:  5'- cGUCGGGCcCGCCgUGCCaGCgcCGCcGCGa -3'
miRNA:   3'- -CAGCUCGaGCGG-ACGG-CGa-GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 88403 0.7 0.55691
Target:  5'- cGUCGAGCUCaUCUGCaacCGCgagaaggCGCGGCa -3'
miRNA:   3'- -CAGCUCGAGcGGACG---GCGa------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 135728 0.71 0.501194
Target:  5'- cUCGcGCUCGCC-GCUGCUacUGCGGUGg -3'
miRNA:   3'- cAGCuCGAGCGGaCGGCGA--GCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.