Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13979 | 5' | -61.4 | NC_003521.1 | + | 198821 | 0.67 | 0.694923 |
Target: 5'- uGUCGuGC-CGCCguguUGCUGCUgcgaccuuaagaaggCGCGGCGg -3' miRNA: 3'- -CAGCuCGaGCGG----ACGGCGA---------------GCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 193158 | 0.67 | 0.709105 |
Target: 5'- -gCGGGggCGUCUGCUGCUgcuguugCGCAGCu -3' miRNA: 3'- caGCUCgaGCGGACGGCGA-------GCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 33097 | 0.67 | 0.710046 |
Target: 5'- -aCGGGCUCcaGCCaGCCGaugacggCGUAGCGg -3' miRNA: 3'- caGCUCGAG--CGGaCGGCga-----GCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 153445 | 0.67 | 0.691122 |
Target: 5'- gGUCGcGCUCguagGCCaGCgGCUCGCAGg- -3' miRNA: 3'- -CAGCuCGAG----CGGaCGgCGAGCGUCgc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 38915 | 0.66 | 0.791408 |
Target: 5'- uUCGGaugccGC-CGCCUGCUGUUCGgucauCGGCGg -3' miRNA: 3'- cAGCU-----CGaGCGGACGGCGAGC-----GUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 18713 | 0.71 | 0.46544 |
Target: 5'- aUCcGGCUgUGgCUGCCGCUgGCGGCGg -3' miRNA: 3'- cAGcUCGA-GCgGACGGCGAgCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 142560 | 0.67 | 0.727807 |
Target: 5'- uGUCGcccgccaGGCUCGCCgUGcCCGC-CGUGGCc -3' miRNA: 3'- -CAGC-------UCGAGCGG-AC-GGCGaGCGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 225778 | 0.68 | 0.681591 |
Target: 5'- cUCGcGCUCGC--GCCGCUCGuCAGgGu -3' miRNA: 3'- cAGCuCGAGCGgaCGGCGAGC-GUCgC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 69849 | 0.7 | 0.519519 |
Target: 5'- gGUCGAuGacgCGCCgaugagGCCGCcgCGCAGCGc -3' miRNA: 3'- -CAGCU-Cga-GCGGa-----CGGCGa-GCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 202300 | 0.66 | 0.791408 |
Target: 5'- uGUCGAGCUcCGCCggcccgacuucUGCUGCUggaacugcugcCGguGCu -3' miRNA: 3'- -CAGCUCGA-GCGG-----------ACGGCGA-----------GCguCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 202534 | 0.66 | 0.791408 |
Target: 5'- -aCGAGCUCucgcaCCUGCUGCgCGcCGGCc -3' miRNA: 3'- caGCUCGAGc----GGACGGCGaGC-GUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 157971 | 0.66 | 0.791408 |
Target: 5'- -aCGGcGCUgguagcgaCGCC-GCCGCcCGCGGCGa -3' miRNA: 3'- caGCU-CGA--------GCGGaCGGCGaGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 40311 | 0.66 | 0.791408 |
Target: 5'- cGUUGAGC-C-CCUugGCCaGCUCGguGCGc -3' miRNA: 3'- -CAGCUCGaGcGGA--CGG-CGAGCguCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 109988 | 0.66 | 0.791408 |
Target: 5'- --aGGGCg-GCCUGCCGgUC-CAGCa -3' miRNA: 3'- cagCUCGagCGGACGGCgAGcGUCGc -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 163135 | 0.66 | 0.782777 |
Target: 5'- cUCGGGCaUCuGUCUGCC-CUCGUcccugAGCGg -3' miRNA: 3'- cAGCUCG-AG-CGGACGGcGAGCG-----UCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 6375 | 0.66 | 0.782777 |
Target: 5'- gGUCGGGgUCGCggaggggcGCCGCagcuacCGCGGCGg -3' miRNA: 3'- -CAGCUCgAGCGga------CGGCGa-----GCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 104682 | 0.66 | 0.791408 |
Target: 5'- --gGAGCUCGaggggGCCGUggGCGGCGu -3' miRNA: 3'- cagCUCGAGCgga--CGGCGagCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 152340 | 0.68 | 0.678724 |
Target: 5'- uUCGGGCccgCGCCgacGCUGCUCuggggccggccgggGCGGCGc -3' miRNA: 3'- cAGCUCGa--GCGGa--CGGCGAG--------------CGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 167580 | 0.7 | 0.55691 |
Target: 5'- cGUCGucacGC-CGCUgcuguUGCCGCUCGUGGUGg -3' miRNA: 3'- -CAGCu---CGaGCGG-----ACGGCGAGCGUCGC- -5' |
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13979 | 5' | -61.4 | NC_003521.1 | + | 226617 | 0.7 | 0.547481 |
Target: 5'- cGUCagGGGCUCGCCgcaGCacaccagcuUGCUCGCGGCc -3' miRNA: 3'- -CAG--CUCGAGCGGa--CG---------GCGAGCGUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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