miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 163135 0.66 0.782777
Target:  5'- cUCGGGCaUCuGUCUGCC-CUCGUcccugAGCGg -3'
miRNA:   3'- cAGCUCG-AG-CGGACGGcGAGCG-----UCGC- -5'
13979 5' -61.4 NC_003521.1 + 167519 0.66 0.774026
Target:  5'- aGUCGAgcagccaggucuGCUCGgcguCCUGCCGCagGCAGa- -3'
miRNA:   3'- -CAGCU------------CGAGC----GGACGGCGagCGUCgc -5'
13979 5' -61.4 NC_003521.1 + 103437 0.66 0.774026
Target:  5'- uGUCGAcGCgCGUCUGCaccaGUUCGCGuccGCGg -3'
miRNA:   3'- -CAGCU-CGaGCGGACGg---CGAGCGU---CGC- -5'
13979 5' -61.4 NC_003521.1 + 102751 0.66 0.774026
Target:  5'- --aGGGCcagCGCCUcaGCUGUcCGCGGCGg -3'
miRNA:   3'- cagCUCGa--GCGGA--CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 204019 0.66 0.774026
Target:  5'- -cCGAGUcCGCCguccgcgaGCgGCUCcGCAGCGc -3'
miRNA:   3'- caGCUCGaGCGGa-------CGgCGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 153500 0.66 0.774026
Target:  5'- -gCGcAGCUgCGCCUccaGgCGCUCGCuGCGc -3'
miRNA:   3'- caGC-UCGA-GCGGA---CgGCGAGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 170981 0.66 0.774026
Target:  5'- aUCGgcAGCgucaUCGaCCUGCCGCUCuGguGCc -3'
miRNA:   3'- cAGC--UCG----AGC-GGACGGCGAG-CguCGc -5'
13979 5' -61.4 NC_003521.1 + 101382 0.66 0.774026
Target:  5'- -gCGAGC-CGUCgcGCCGCUUGaCGGCc -3'
miRNA:   3'- caGCUCGaGCGGa-CGGCGAGC-GUCGc -5'
13979 5' -61.4 NC_003521.1 + 137302 0.66 0.774026
Target:  5'- -gCGGGUggCGCg-GCUGCUgCGCGGCGa -3'
miRNA:   3'- caGCUCGa-GCGgaCGGCGA-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 122843 0.66 0.766053
Target:  5'- cGUCGcgcAGCUCGUCguagcgcuggugcugGCCGC-CGCcGCGa -3'
miRNA:   3'- -CAGC---UCGAGCGGa--------------CGGCGaGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 211703 0.66 0.765162
Target:  5'- --aGGGCcuccaGCUUGCCGC-CGUGGCGg -3'
miRNA:   3'- cagCUCGag---CGGACGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 96970 0.66 0.765162
Target:  5'- --aGGGCUCGCUgagGCUGUagUCGCagagGGCGg -3'
miRNA:   3'- cagCUCGAGCGGa--CGGCG--AGCG----UCGC- -5'
13979 5' -61.4 NC_003521.1 + 52362 0.66 0.765162
Target:  5'- cUCGuAGCUCGgaggcgcgucauCCUGaCCGCcgUCGCGGCc -3'
miRNA:   3'- cAGC-UCGAGC------------GGAC-GGCG--AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 16567 0.66 0.765162
Target:  5'- --aGGGCgcgCGCCUGCauuucaccaUGUUCGaCAGCGg -3'
miRNA:   3'- cagCUCGa--GCGGACG---------GCGAGC-GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 90426 0.66 0.765162
Target:  5'- -cCGGGCUCGUC-GCCGC-CGaaaAGCu -3'
miRNA:   3'- caGCUCGAGCGGaCGGCGaGCg--UCGc -5'
13979 5' -61.4 NC_003521.1 + 206354 0.66 0.757095
Target:  5'- -gCGAGCUgcugGCCUGCgGCgacgacccccaggccCGCAGCGc -3'
miRNA:   3'- caGCUCGAg---CGGACGgCGa--------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 113383 0.66 0.756193
Target:  5'- -aCGgccAGCUgGCCgacgaGCCGCUgGCGGCc -3'
miRNA:   3'- caGC---UCGAgCGGa----CGGCGAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 144283 0.66 0.756193
Target:  5'- -gCGAGCacggcgacUCGCugCUGCCGCacgCGCuGCGg -3'
miRNA:   3'- caGCUCG--------AGCG--GACGGCGa--GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 127835 0.66 0.756193
Target:  5'- -cCGGGUgguaguggCGCCcGCCGCUgaGCGGCa -3'
miRNA:   3'- caGCUCGa-------GCGGaCGGCGAg-CGUCGc -5'
13979 5' -61.4 NC_003521.1 + 167461 0.66 0.756193
Target:  5'- -aUGAGCgUGCUgaggGCCGUgCGCGGCGc -3'
miRNA:   3'- caGCUCGaGCGGa---CGGCGaGCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.