miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 184164 0.66 0.638989
Target:  5'- -cUGG-UGCGCGaGCGGGA-GGUgcaccGGCCc -3'
miRNA:   3'- uaACCgGCGCGC-CGCCCUgCCA-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 17356 0.66 0.657811
Target:  5'- --gGGCCGUGaCGcCGGcGCGGcGGCCc -3'
miRNA:   3'- uaaCCGGCGC-GCcGCCcUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 42613 0.66 0.676562
Target:  5'- --cGGCCGC-CGGCGGcGCcGUcGCCg -3'
miRNA:   3'- uaaCCGGCGcGCCGCCcUGcCAcCGG- -5'
13980 3' -64.3 NC_003521.1 + 19962 0.66 0.657811
Target:  5'- -gUGGCCGgGCuGGCGGuGAUcGUGaCCu -3'
miRNA:   3'- uaACCGGCgCG-CCGCC-CUGcCACcGG- -5'
13980 3' -64.3 NC_003521.1 + 204703 0.66 0.657811
Target:  5'- --gGGCaGCGaggugaccaccaCGGCGGGGagGGUGGCg -3'
miRNA:   3'- uaaCCGgCGC------------GCCGCCCUg-CCACCGg -5'
13980 3' -64.3 NC_003521.1 + 221811 0.66 0.638989
Target:  5'- --gGGCUcCGuCGGCGGGGCGGgcguGUCu -3'
miRNA:   3'- uaaCCGGcGC-GCCGCCCUGCCac--CGG- -5'
13980 3' -64.3 NC_003521.1 + 46552 0.66 0.638047
Target:  5'- --gGGCCuCGCGcCGGGugcugaaGCGGUGGUUg -3'
miRNA:   3'- uaaCCGGcGCGCcGCCC-------UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 221360 0.66 0.629568
Target:  5'- -cUGGCCGCGCaGCGacAUGGUcccGCCg -3'
miRNA:   3'- uaACCGGCGCGcCGCccUGCCAc--CGG- -5'
13980 3' -64.3 NC_003521.1 + 150618 0.66 0.629568
Target:  5'- --gGGCUGuUGCGGCGGcugcugcgcaGGCGGgGGCg -3'
miRNA:   3'- uaaCCGGC-GCGCCGCC----------CUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 116465 0.66 0.629568
Target:  5'- --cGGCCGU--GGUGGGACacGUGGCg -3'
miRNA:   3'- uaaCCGGCGcgCCGCCCUGc-CACCGg -5'
13980 3' -64.3 NC_003521.1 + 129668 0.66 0.667199
Target:  5'- --cGGCCGCGCuauGC-GGACcgucccGUGGCCc -3'
miRNA:   3'- uaaCCGGCGCGc--CGcCCUGc-----CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 198208 0.66 0.629568
Target:  5'- -aUGGCgGCGaCGGCGccgcCGGcGGCCg -3'
miRNA:   3'- uaACCGgCGC-GCCGCccu-GCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 46389 0.66 0.648405
Target:  5'- --gGGgCGCGgGGUgcguGGGGCGcGcgGGCCa -3'
miRNA:   3'- uaaCCgGCGCgCCG----CCCUGC-Ca-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 36592 0.66 0.648405
Target:  5'- -cUGGCCuG-GCGGCGGG----UGGCCg -3'
miRNA:   3'- uaACCGG-CgCGCCGCCCugccACCGG- -5'
13980 3' -64.3 NC_003521.1 + 181450 0.66 0.648405
Target:  5'- --aGuGCUGCGCGGCGuccaGCGGcUGGCg -3'
miRNA:   3'- uaaC-CGGCGCGCCGCcc--UGCC-ACCGg -5'
13980 3' -64.3 NC_003521.1 + 74228 0.66 0.629568
Target:  5'- --aGGCCGU-CGGCGccguGACGGUGGaCg -3'
miRNA:   3'- uaaCCGGCGcGCCGCc---CUGCCACCgG- -5'
13980 3' -64.3 NC_003521.1 + 123717 0.66 0.638989
Target:  5'- --cGGCUGaGCGGCGGa--GGcGGCCu -3'
miRNA:   3'- uaaCCGGCgCGCCGCCcugCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 72531 0.67 0.591961
Target:  5'- --cGaGCUGCggagGCGGCGGcGACGGUGucGUCg -3'
miRNA:   3'- uaaC-CGGCG----CGCCGCC-CUGCCAC--CGG- -5'
13980 3' -64.3 NC_003521.1 + 76468 0.67 0.572353
Target:  5'- --aGGUCGCugugGCGGUaggagcugucgccGGGACGcGUGGCg -3'
miRNA:   3'- uaaCCGGCG----CGCCG-------------CCCUGC-CACCGg -5'
13980 3' -64.3 NC_003521.1 + 85114 0.67 0.573284
Target:  5'- --cGGCgGCaGCGGCGGG-CGGcacguaGCCu -3'
miRNA:   3'- uaaCCGgCG-CGCCGCCCuGCCac----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.