miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 101756 0.77 0.1674
Target:  5'- --aGGUCGUGCGGC-GGAUGGUGGUg -3'
miRNA:   3'- uaaCCGGCGCGCCGcCCUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 131047 0.77 0.163534
Target:  5'- --gGGCgGCgGCGGCGGGccucuggacGCGGUGGCg -3'
miRNA:   3'- uaaCCGgCG-CGCCGCCC---------UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 168540 0.77 0.156043
Target:  5'- --cGGCCaGCGCGGCGGcGGCGcUGGCg -3'
miRNA:   3'- uaaCCGG-CGCGCCGCC-CUGCcACCGg -5'
13980 3' -64.3 NC_003521.1 + 148432 0.79 0.120149
Target:  5'- --cGGCCGCGcCGGCGGcuccaGgGGUGGCCg -3'
miRNA:   3'- uaaCCGGCGC-GCCGCCc----UgCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 209555 0.79 0.111781
Target:  5'- --cGGCgGgGUGGCGGcGACGGUGGCg -3'
miRNA:   3'- uaaCCGgCgCGCCGCC-CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 131088 0.73 0.275173
Target:  5'- --cGGCuCGCGCgggcuccggacGGCGGGGCGGcgcGGCUg -3'
miRNA:   3'- uaaCCG-GCGCG-----------CCGCCCUGCCa--CCGG- -5'
13980 3' -64.3 NC_003521.1 + 196713 0.73 0.275173
Target:  5'- --cGGCCGacuucacCGGCGGcGACGGUGGUg -3'
miRNA:   3'- uaaCCGGCgc-----GCCGCC-CUGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 218383 0.71 0.361705
Target:  5'- --cGuGCCGCGUGaaGCGcGGGCGGUacucGGCCa -3'
miRNA:   3'- uaaC-CGGCGCGC--CGC-CCUGCCA----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 166859 0.71 0.361705
Target:  5'- --cGGUgGCGCGGCGGG-CGcaGGUCg -3'
miRNA:   3'- uaaCCGgCGCGCCGCCCuGCcaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 32349 0.71 0.354418
Target:  5'- cGUUuGCCGgaGcCGGCGGGACGG-GGCUu -3'
miRNA:   3'- -UAAcCGGCg-C-GCCGCCCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 239428 0.71 0.353695
Target:  5'- cUUGGUCagcguccgcagcaGCGCGGgcuCGGGgacaGCGGUGGCCc -3'
miRNA:   3'- uAACCGG-------------CGCGCC---GCCC----UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 238462 0.72 0.326317
Target:  5'- --cGGCCucgGCG-GGCGGGGCGGagacgcGGCCc -3'
miRNA:   3'- uaaCCGG---CGCgCCGCCCUGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 197471 0.72 0.326317
Target:  5'- -cUGGCggauguucaCGCGCGGCGGGcCGGacGGCg -3'
miRNA:   3'- uaACCG---------GCGCGCCGCCCuGCCa-CCGg -5'
13980 3' -64.3 NC_003521.1 + 125819 0.72 0.326317
Target:  5'- -gUGGCCguaaacgucuGCGCGuCGGGcucGCGGUGGUCg -3'
miRNA:   3'- uaACCGG----------CGCGCcGCCC---UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 88662 0.72 0.326317
Target:  5'- --gGGCCGCcagguCGGUGGGcCGGcGGCCc -3'
miRNA:   3'- uaaCCGGCGc----GCCGCCCuGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 200301 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 178277 0.72 0.312899
Target:  5'- ---cGCgCGCGCGaacgaGCGGGACGGguucGGCCa -3'
miRNA:   3'- uaacCG-GCGCGC-----CGCCCUGCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 192229 0.73 0.293563
Target:  5'- cUUGcGaCCcgGCGCcGCGGGAgGGUGGCCg -3'
miRNA:   3'- uAAC-C-GG--CGCGcCGCCCUgCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 92018 0.73 0.287328
Target:  5'- --aGGCgCG-GCGGCGGcGGCGGUGGguCCg -3'
miRNA:   3'- uaaCCG-GCgCGCCGCC-CUGCCACC--GG- -5'
13980 3' -64.3 NC_003521.1 + 168435 0.73 0.280591
Target:  5'- --gGGCCGCgGCGGCGGGcgugaagaGCgugauggggcgcuGGUGGCUg -3'
miRNA:   3'- uaaCCGGCG-CGCCGCCC--------UG-------------CCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.