miRNA display CGI


Results 61 - 80 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 178277 0.72 0.312899
Target:  5'- ---cGCgCGCGCGaacgaGCGGGACGGguucGGCCa -3'
miRNA:   3'- uaacCG-GCGCGC-----CGCCCUGCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 200301 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 218619 0.71 0.384184
Target:  5'- --cGGCCgccagcGCGCGGCGGuaaGCGGccacGGCCg -3'
miRNA:   3'- uaaCCGG------CGCGCCGCCc--UGCCa---CCGG- -5'
13980 3' -64.3 NC_003521.1 + 147445 0.7 0.407569
Target:  5'- --aGGCUGCGCGcGCGGaaguaGCGGaUGGCg -3'
miRNA:   3'- uaaCCGGCGCGC-CGCCc----UGCC-ACCGg -5'
13980 3' -64.3 NC_003521.1 + 118921 0.7 0.407569
Target:  5'- --cGGCgC-CGCGGCGuGGGCGGcGGCg -3'
miRNA:   3'- uaaCCG-GcGCGCCGC-CCUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 101797 0.7 0.414757
Target:  5'- aGUUGGgCGCGCacgaagcccagggGGCGGucGCGGUaGGCCu -3'
miRNA:   3'- -UAACCgGCGCG-------------CCGCCc-UGCCA-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 178842 0.7 0.423647
Target:  5'- --aGGCgGCGCGGgGGcGACGGgaaagucagcgGGCa -3'
miRNA:   3'- uaaCCGgCGCGCCgCC-CUGCCa----------CCGg -5'
13980 3' -64.3 NC_003521.1 + 120498 0.7 0.440098
Target:  5'- --aGGCgCGUGUGG-GGGACGacGUGGCUu -3'
miRNA:   3'- uaaCCG-GCGCGCCgCCCUGC--CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 72846 0.69 0.456907
Target:  5'- --cGGCC-UGgGGCGGcGACGGUaGGCa -3'
miRNA:   3'- uaaCCGGcGCgCCGCC-CUGCCA-CCGg -5'
13980 3' -64.3 NC_003521.1 + 112819 0.69 0.46031
Target:  5'- --cGGCCGCgaccccccggauuccGUGGCGGG-CGucaUGGCCg -3'
miRNA:   3'- uaaCCGGCG---------------CGCCGCCCuGCc--ACCGG- -5'
13980 3' -64.3 NC_003521.1 + 157293 0.71 0.384184
Target:  5'- --cGGCCGCGUacggggggaGGCGGGAUuGGacGCCg -3'
miRNA:   3'- uaaCCGGCGCG---------CCGCCCUG-CCacCGG- -5'
13980 3' -64.3 NC_003521.1 + 111175 0.71 0.369095
Target:  5'- --cGGCCGCccCGGCGacggcgccgcGGACGGUGGgCu -3'
miRNA:   3'- uaaCCGGCGc-GCCGC----------CCUGCCACCgG- -5'
13980 3' -64.3 NC_003521.1 + 88662 0.72 0.326317
Target:  5'- --gGGCCGCcagguCGGUGGGcCGGcGGCCc -3'
miRNA:   3'- uaaCCGGCGc----GCCGCCCuGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 125819 0.72 0.326317
Target:  5'- -gUGGCCguaaacgucuGCGCGuCGGGcucGCGGUGGUCg -3'
miRNA:   3'- uaACCGG----------CGCGCcGCCC---UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 197471 0.72 0.326317
Target:  5'- -cUGGCggauguucaCGCGCGGCGGGcCGGacGGCg -3'
miRNA:   3'- uaACCG---------GCGCGCCGCCCuGCCa-CCGg -5'
13980 3' -64.3 NC_003521.1 + 238462 0.72 0.326317
Target:  5'- --cGGCCucgGCG-GGCGGGGCGGagacgcGGCCc -3'
miRNA:   3'- uaaCCGG---CGCgCCGCCCUGCCa-----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 239428 0.71 0.353695
Target:  5'- cUUGGUCagcguccgcagcaGCGCGGgcuCGGGgacaGCGGUGGCCc -3'
miRNA:   3'- uAACCGG-------------CGCGCC---GCCC----UGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 32349 0.71 0.354418
Target:  5'- cGUUuGCCGgaGcCGGCGGGACGG-GGCUu -3'
miRNA:   3'- -UAAcCGGCg-C-GCCGCCCUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 166859 0.71 0.361705
Target:  5'- --cGGUgGCGCGGCGGG-CGcaGGUCg -3'
miRNA:   3'- uaaCCGgCGCGCCGCCCuGCcaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 218383 0.71 0.361705
Target:  5'- --cGuGCCGCGUGaaGCGcGGGCGGUacucGGCCa -3'
miRNA:   3'- uaaC-CGGCGCGC--CGC-CCUGCCA----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.