miRNA display CGI


Results 41 - 60 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 7740 0.7 0.399675
Target:  5'- --cGGCgCGaGCGGCGGaGGCGGcGGCa -3'
miRNA:   3'- uaaCCG-GCgCGCCGCC-CUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 240622 0.72 0.319555
Target:  5'- --cGGCggCGUGCGGCGGGcCGGccGGUCg -3'
miRNA:   3'- uaaCCG--GCGCGCCGCCCuGCCa-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 39525 0.79 0.109115
Target:  5'- --gGGUCGCGCGGCGagagcuggcgcaGGuCGGUGGCCc -3'
miRNA:   3'- uaaCCGGCGCGCCGC------------CCuGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 136639 0.71 0.39188
Target:  5'- --cGGCCaCGgGcGCGGGGCGGcGGCg -3'
miRNA:   3'- uaaCCGGcGCgC-CGCCCUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 209083 0.84 0.053494
Target:  5'- --cGGUCGagGCGGCGGaGGCGGUGGCCg -3'
miRNA:   3'- uaaCCGGCg-CGCCGCC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 39575 0.69 0.488879
Target:  5'- -cUGGCUGCGCGGCGuGAUGcgcgcguagaagccGUacGGCCg -3'
miRNA:   3'- uaACCGGCGCGCCGCcCUGC--------------CA--CCGG- -5'
13980 3' -64.3 NC_003521.1 + 14752 0.76 0.183268
Target:  5'- --gGGCCGgcCGCGGcCGGGGCGcgccuucGUGGCCg -3'
miRNA:   3'- uaaCCGGC--GCGCC-GCCCUGC-------CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 76201 0.69 0.474054
Target:  5'- --aGGCgGuCGCGGUGGugguaugaguGGCGGcGGCCg -3'
miRNA:   3'- uaaCCGgC-GCGCCGCC----------CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 47614 0.69 0.456907
Target:  5'- cUUGGCCGCcaucguccagGCGGCcGuGACGGcGGCUc -3'
miRNA:   3'- uAACCGGCG----------CGCCGcC-CUGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 211452 0.7 0.440098
Target:  5'- --cGGCCuCGCGGuCGGGGCa--GGCCa -3'
miRNA:   3'- uaaCCGGcGCGCC-GCCCUGccaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 19475 0.7 0.431827
Target:  5'- ---cGCUGCGCGGCcaGGuGCaGGUGGCCc -3'
miRNA:   3'- uaacCGGCGCGCCG--CCcUG-CCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 37410 0.7 0.423647
Target:  5'- --gGGCCuuguGCGaCGGCcuGGGAgGcGUGGCCg -3'
miRNA:   3'- uaaCCGG----CGC-GCCG--CCCUgC-CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 172325 0.7 0.407569
Target:  5'- --aGGCCGguCGCGGC-GGACGGgugaggGGCg -3'
miRNA:   3'- uaaCCGGC--GCGCCGcCCUGCCa-----CCGg -5'
13980 3' -64.3 NC_003521.1 + 123681 0.71 0.39188
Target:  5'- --cGGCgCGCuGCGGCGuGGCGGUGGa- -3'
miRNA:   3'- uaaCCG-GCG-CGCCGCcCUGCCACCgg -5'
13980 3' -64.3 NC_003521.1 + 43568 0.71 0.361705
Target:  5'- --cGGCCGCugacUGGgGGGACGGgGGCa -3'
miRNA:   3'- uaaCCGGCGc---GCCgCCCUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 122508 0.72 0.333184
Target:  5'- --gGGCCaacGCgGCGGCGGGcaggccggcgGCGGUGGUa -3'
miRNA:   3'- uaaCCGG---CG-CGCCGCCC----------UGCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 111243 0.72 0.329051
Target:  5'- --cGGCCgGCGCGGCGcGGCGGagcagccaucgucgGGCCc -3'
miRNA:   3'- uaaCCGG-CGCGCCGCcCUGCCa-------------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 195183 0.73 0.299903
Target:  5'- --cGGaCCcCGCGGagcCGGcGGCGGUGGCCg -3'
miRNA:   3'- uaaCC-GGcGCGCC---GCC-CUGCCACCGG- -5'
13980 3' -64.3 NC_003521.1 + 123560 0.74 0.257715
Target:  5'- --cGGCCGaCGaCGGCGGuGGCGGgaUGGCg -3'
miRNA:   3'- uaaCCGGC-GC-GCCGCC-CUGCC--ACCGg -5'
13980 3' -64.3 NC_003521.1 + 98478 0.75 0.220507
Target:  5'- --cGGCCGCgGCGGCcGuGGCGGcGGCCu -3'
miRNA:   3'- uaaCCGGCG-CGCCGcC-CUGCCaCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.