miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 3' -53.8 NC_003521.1 + 86252 0.66 0.989171
Target:  5'- cGUgcAgGGCGAAGucGGCCGgcgAGGCGa -3'
miRNA:   3'- -CGaaUgCCGCUUCucCCGGU---UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 168924 0.66 0.989171
Target:  5'- --gUGauGCGAGGAGGGCgCAGGcAgGGc -3'
miRNA:   3'- cgaAUgcCGCUUCUCCCG-GUUC-UgCC- -5'
13981 3' -53.8 NC_003521.1 + 43447 0.66 0.98835
Target:  5'- ---gGCGGCGGcccuggaacucucacAGcGGGCCAGcGCGGc -3'
miRNA:   3'- cgaaUGCCGCU---------------UCuCCCGGUUcUGCC- -5'
13981 3' -53.8 NC_003521.1 + 112076 0.66 0.987777
Target:  5'- ---cGCGGUGggGAucagGGGCgGcuGGCGGg -3'
miRNA:   3'- cgaaUGCCGCuuCU----CCCGgUu-CUGCC- -5'
13981 3' -53.8 NC_003521.1 + 122804 0.66 0.987777
Target:  5'- gGCggGCGGCGAAGAGaucgcGCUugagcucguGGAUGGc -3'
miRNA:   3'- -CGaaUGCCGCUUCUCc----CGGu--------UCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 148383 0.66 0.987777
Target:  5'- aGCggggUGCGGgGAggcuGGGGGGUgAGGGCu- -3'
miRNA:   3'- -CGa---AUGCCgCU----UCUCCCGgUUCUGcc -5'
13981 3' -53.8 NC_003521.1 + 119787 0.66 0.987777
Target:  5'- gGCgcaGCGGCGAcGAGGucggcgccGCCGAGGaGGu -3'
miRNA:   3'- -CGaa-UGCCGCUuCUCC--------CGGUUCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 118676 0.66 0.987777
Target:  5'- gGCUUcgggagGCGGCGGuaccgcugguGGAGGGCaggcucauGGGCGa -3'
miRNA:   3'- -CGAA------UGCCGCU----------UCUCCCGgu------UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 101717 0.66 0.987777
Target:  5'- aGCacgAUGcGCGgcGGGGGC-GAGAUGGg -3'
miRNA:   3'- -CGaa-UGC-CGCuuCUCCCGgUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 181856 0.66 0.986876
Target:  5'- uGCcugACGGCGcgcuucuucgcgccAGAGGGCCuGGugGa -3'
miRNA:   3'- -CGaa-UGCCGCu-------------UCUCCCGGuUCugCc -5'
13981 3' -53.8 NC_003521.1 + 125713 0.66 0.986248
Target:  5'- cGCcgGCGGUcacGAcGGGGGCgGcGACGGc -3'
miRNA:   3'- -CGaaUGCCG---CUuCUCCCGgUuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 205133 0.66 0.986248
Target:  5'- cGUcgAUGGUGAAccAGGGCCGGGugGc -3'
miRNA:   3'- -CGaaUGCCGCUUc-UCCCGGUUCugCc -5'
13981 3' -53.8 NC_003521.1 + 159766 0.66 0.986248
Target:  5'- cGCUUaACGGUuacuGGGGGGUU-GGACGGa -3'
miRNA:   3'- -CGAA-UGCCGcu--UCUCCCGGuUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 137254 0.66 0.986248
Target:  5'- gGCcgACGGCGGcAGcGGGCaGAG-CGGg -3'
miRNA:   3'- -CGaaUGCCGCU-UCuCCCGgUUCuGCC- -5'
13981 3' -53.8 NC_003521.1 + 196878 0.66 0.986248
Target:  5'- ---aACGGCaccgcGGGuGaGGCCGGGGCGGa -3'
miRNA:   3'- cgaaUGCCGc----UUCuC-CCGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 74913 0.66 0.986248
Target:  5'- ---gGCGGUGGAGucGGCCcGGcagcGCGGg -3'
miRNA:   3'- cgaaUGCCGCUUCucCCGGuUC----UGCC- -5'
13981 3' -53.8 NC_003521.1 + 35807 0.66 0.986248
Target:  5'- --cUACGGCGgcGuGGGCgAGaaccuGGCGGu -3'
miRNA:   3'- cgaAUGCCGCuuCuCCCGgUU-----CUGCC- -5'
13981 3' -53.8 NC_003521.1 + 102676 0.66 0.986087
Target:  5'- uGCUUGagcaGGuCGAAGGGGaacaugcugcgguGCCAGGucuCGGa -3'
miRNA:   3'- -CGAAUg---CC-GCUUCUCC-------------CGGUUCu--GCC- -5'
13981 3' -53.8 NC_003521.1 + 48259 0.66 0.986087
Target:  5'- ---cGCGGgGGaagggagAGAGGGagAAGACGGg -3'
miRNA:   3'- cgaaUGCCgCU-------UCUCCCggUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 123169 0.67 0.984576
Target:  5'- uGCUgagguggcgGCGGCGgcGGGGGaCCGuAGGCc- -3'
miRNA:   3'- -CGAa--------UGCCGCuuCUCCC-GGU-UCUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.