miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13982 5' -53.9 NC_003521.1 + 211941 0.66 0.981439
Target:  5'- cUCGUAGACCuCCGugagcuUGGGCGAcucgaccgugccGCGCc -3'
miRNA:   3'- cAGCAUCUGGuGGU------ACCUGCU------------CGUGu -5'
13982 5' -53.9 NC_003521.1 + 124108 0.66 0.979323
Target:  5'- -cCG-GGACCGCCguggaaGUGGACG-GCGCu -3'
miRNA:   3'- caGCaUCUGGUGG------UACCUGCuCGUGu -5'
13982 5' -53.9 NC_003521.1 + 157371 0.66 0.979323
Target:  5'- -aCGUGGGCCagagucucACCuacGACGAGCACc -3'
miRNA:   3'- caGCAUCUGG--------UGGuacCUGCUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 155200 0.66 0.979323
Target:  5'- uUCGgcaucCCGCuCAaGGACGAGCACGu -3'
miRNA:   3'- cAGCaucu-GGUG-GUaCCUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 36868 0.66 0.979323
Target:  5'- -aCGUGGGCCGgCAagcgGGugaccacguACGGGCACAa -3'
miRNA:   3'- caGCAUCUGGUgGUa---CC---------UGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 160310 0.66 0.978879
Target:  5'- --gGUGGGCacggccaucggaGCCGUGGGCG-GCGCGg -3'
miRNA:   3'- cagCAUCUGg-----------UGGUACCUGCuCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 14371 0.67 0.974561
Target:  5'- --gGUGGcCCACaaccUGGACGAGCugGc -3'
miRNA:   3'- cagCAUCuGGUGgu--ACCUGCUCGugU- -5'
13982 5' -53.9 NC_003521.1 + 223971 0.67 0.974561
Target:  5'- cGUCGUAGAcguCCGCCugcgccGGCGAGgACGg -3'
miRNA:   3'- -CAGCAUCU---GGUGGuac---CUGCUCgUGU- -5'
13982 5' -53.9 NC_003521.1 + 116017 0.67 0.971901
Target:  5'- -gCGUcuccAGGCCGCgGUGGAaGAGCAUc -3'
miRNA:   3'- caGCA----UCUGGUGgUACCUgCUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 93819 0.67 0.971901
Target:  5'- ------aACCACCGUGGucCGGGCACGg -3'
miRNA:   3'- cagcaucUGGUGGUACCu-GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 123196 0.67 0.971901
Target:  5'- -cCGUAGGCCgcauacggcGCCGgguaGGACGGGgGCGg -3'
miRNA:   3'- caGCAUCUGG---------UGGUa---CCUGCUCgUGU- -5'
13982 5' -53.9 NC_003521.1 + 159815 0.67 0.969047
Target:  5'- uUCGUcacGGACCgGCCGUGaGGCGcuGCGCGg -3'
miRNA:   3'- cAGCA---UCUGG-UGGUAC-CUGCu-CGUGU- -5'
13982 5' -53.9 NC_003521.1 + 100875 0.67 0.969047
Target:  5'- ----aAGAgCGCCcUGGACGAGCugGc -3'
miRNA:   3'- cagcaUCUgGUGGuACCUGCUCGugU- -5'
13982 5' -53.9 NC_003521.1 + 117698 0.67 0.965993
Target:  5'- -cCGUAGACgcgaCAUgAUGGACGAuGCGCc -3'
miRNA:   3'- caGCAUCUG----GUGgUACCUGCU-CGUGu -5'
13982 5' -53.9 NC_003521.1 + 182215 0.67 0.965993
Target:  5'- cUUGUcuuuuaAGACCGCCAaaaccUGccGGCGAGCGCAu -3'
miRNA:   3'- cAGCA------UCUGGUGGU-----AC--CUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 232446 0.68 0.964061
Target:  5'- gGUCGacUGGACCACCcaguuuuucuucucUGGcuGCGAGCGCu -3'
miRNA:   3'- -CAGC--AUCUGGUGGu-------------ACC--UGCUCGUGu -5'
13982 5' -53.9 NC_003521.1 + 109585 0.68 0.962732
Target:  5'- -gCGUgaAGugCGCCAgcucGGccaGCGAGCACAg -3'
miRNA:   3'- caGCA--UCugGUGGUa---CC---UGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 162195 0.68 0.962732
Target:  5'- ----aGGACCACCuaccugGGGCGAGCcgcGCAg -3'
miRNA:   3'- cagcaUCUGGUGGua----CCUGCUCG---UGU- -5'
13982 5' -53.9 NC_003521.1 + 36627 0.68 0.962732
Target:  5'- cUUGUGGugcGCCugCAUGGACuggaaGGCGCAc -3'
miRNA:   3'- cAGCAUC---UGGugGUACCUGc----UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 226464 0.68 0.962732
Target:  5'- gGUUGUGGGCCACCAgcaccagguacUGGucGCGGGUg-- -3'
miRNA:   3'- -CAGCAUCUGGUGGU-----------ACC--UGCUCGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.