miRNA display CGI


Results 21 - 40 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 3' -64.1 NC_003521.1 + 178032 0.66 0.670775
Target:  5'- -gGuCGUCaaagacgCCGgGCCCGUCAGGCUg -3'
miRNA:   3'- cgC-GCAGga-----GGUgCGGGCGGUCCGGu -5'
13983 3' -64.1 NC_003521.1 + 18041 0.66 0.670775
Target:  5'- cGUGCagaaguUCCUCUGCGCCgaccccaccgaCGCCGuGGCCGu -3'
miRNA:   3'- -CGCGc-----AGGAGGUGCGG-----------GCGGU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 98802 0.66 0.66984
Target:  5'- cGCGCGcCgUCCACGUcgaggcguugcagCUGCUuggcgcGGGCCAg -3'
miRNA:   3'- -CGCGCaGgAGGUGCG-------------GGCGG------UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 75240 0.66 0.661408
Target:  5'- uCGUGcCCUUCAUGCaCGCCgaggaGGGCCGg -3'
miRNA:   3'- cGCGCaGGAGGUGCGgGCGG-----UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 82854 0.66 0.661408
Target:  5'- gGCgGCGUCgCUaCCAgcgccgucguCGCCCaGCCucAGGCCAc -3'
miRNA:   3'- -CG-CGCAG-GA-GGU----------GCGGG-CGG--UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 11422 0.66 0.661408
Target:  5'- cCGUGUCC-CCGuaCCCGCCacccgugucuuuGGGCCAc -3'
miRNA:   3'- cGCGCAGGaGGUgcGGGCGG------------UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 38655 0.66 0.661408
Target:  5'- cGCGgGUCCguuUCCGCGUCCugcggucugGCuCGGcGCCAu -3'
miRNA:   3'- -CGCgCAGG---AGGUGCGGG---------CG-GUC-CGGU- -5'
13983 3' -64.1 NC_003521.1 + 76121 0.66 0.661408
Target:  5'- cGCGuCGUCUUCUuCGUcagCCGCC-GGCCu -3'
miRNA:   3'- -CGC-GCAGGAGGuGCG---GGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 157140 0.66 0.661408
Target:  5'- cGCGCGUCCacaACGUCacgCGCgAGGUCAa -3'
miRNA:   3'- -CGCGCAGGaggUGCGG---GCGgUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 217721 0.66 0.661408
Target:  5'- uGUGcCGUCCcggCC-C-CCCGCCcGGCCAc -3'
miRNA:   3'- -CGC-GCAGGa--GGuGcGGGCGGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 238882 0.66 0.661408
Target:  5'- cGCGgGUCCguuUCCGCGUCCugcggucugGCuCGGcGCCAu -3'
miRNA:   3'- -CGCgCAGG---AGGUGCGGG---------CG-GUC-CGGU- -5'
13983 3' -64.1 NC_003521.1 + 105543 0.66 0.661408
Target:  5'- cGCGCccguguccucGUCCUCCucgucgucgGCGUCCGCC--GCCGu -3'
miRNA:   3'- -CGCG----------CAGGAGG---------UGCGGGCGGucCGGU- -5'
13983 3' -64.1 NC_003521.1 + 191148 0.66 0.661408
Target:  5'- -gGCGaCagcgCCGCGCUCGCCcGGCCc -3'
miRNA:   3'- cgCGCaGga--GGUGCGGGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 210520 0.66 0.658594
Target:  5'- aGCGCgGUCUgcugaagagcuacuUCgacgacguggagCGCGCCCGCCAgGGUCAg -3'
miRNA:   3'- -CGCG-CAGG--------------AG------------GUGCGGGCGGU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 31274 0.66 0.652022
Target:  5'- cCGuCG-CCgCCAC-CCCGCCGGGCgCAu -3'
miRNA:   3'- cGC-GCaGGaGGUGcGGGCGGUCCG-GU- -5'
13983 3' -64.1 NC_003521.1 + 123882 0.66 0.652022
Target:  5'- aGCGCGUCCa-CGCuguuGCCCaGC-AGGCCGu -3'
miRNA:   3'- -CGCGCAGGagGUG----CGGG-CGgUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 5801 0.66 0.652022
Target:  5'- cCG-GUCCguaaacCCGCGUCCGCgGaGGCCAg -3'
miRNA:   3'- cGCgCAGGa-----GGUGCGGGCGgU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 111253 0.66 0.652022
Target:  5'- gGCGCGgcggagcagCCaucgUCGgGCCCGCCGuGCCAg -3'
miRNA:   3'- -CGCGCa--------GGa---GGUgCGGGCGGUcCGGU- -5'
13983 3' -64.1 NC_003521.1 + 214354 0.66 0.652022
Target:  5'- aGCGCGcaggcggugcUCCcaggCCACG-CCGUugCAGGCCAc -3'
miRNA:   3'- -CGCGC----------AGGa---GGUGCgGGCG--GUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 175780 0.66 0.652022
Target:  5'- gGCGCGUCauuagCCGgGgCUGCacgCGGGCCAg -3'
miRNA:   3'- -CGCGCAGga---GGUgCgGGCG---GUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.