miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 5' -56.6 NC_003521.1 + 19436 0.66 0.937025
Target:  5'- --cGGAgGGUGAGAaagGGggGaGGCGCgGc -3'
miRNA:   3'- gaaCCUgUCGCUCU---CCuuC-CCGUGgC- -5'
13983 5' -56.6 NC_003521.1 + 187066 0.66 0.937025
Target:  5'- --aGGGugcCAGCGAGcGG-AGGGCGCgGu -3'
miRNA:   3'- gaaCCU---GUCGCUCuCCuUCCCGUGgC- -5'
13983 5' -56.6 NC_003521.1 + 40870 0.66 0.937025
Target:  5'- --cGGugAGCcgcgGAG-GGAAGGG-ACCGg -3'
miRNA:   3'- gaaCCugUCG----CUCuCCUUCCCgUGGC- -5'
13983 5' -56.6 NC_003521.1 + 120944 0.66 0.937025
Target:  5'- --cGGcucCGGCGAGGGGcAGGGgGCgGg -3'
miRNA:   3'- gaaCCu--GUCGCUCUCCuUCCCgUGgC- -5'
13983 5' -56.6 NC_003521.1 + 127822 0.66 0.937025
Target:  5'- --aGGcgcGCAGCucGuGGAAGGGCcCCGg -3'
miRNA:   3'- gaaCC---UGUCGcuCuCCUUCCCGuGGC- -5'
13983 5' -56.6 NC_003521.1 + 18168 0.66 0.937025
Target:  5'- -cUGGGCAGCGu--GGAGGcGCugCGc -3'
miRNA:   3'- gaACCUGUCGCucuCCUUCcCGugGC- -5'
13983 5' -56.6 NC_003521.1 + 120626 0.66 0.932227
Target:  5'- uUUGG-CAGCGGGc---AGGGCACCc -3'
miRNA:   3'- gAACCuGUCGCUCuccuUCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 151856 0.66 0.931735
Target:  5'- -cUGGGCGacgagacGCGAGAGGuucuGGcGGCGCUc -3'
miRNA:   3'- gaACCUGU-------CGCUCUCCu---UC-CCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 150032 0.67 0.927206
Target:  5'- --gGGGCuGGgGAGGGGGguaAGGGCucuCCGu -3'
miRNA:   3'- gaaCCUG-UCgCUCUCCU---UCCCGu--GGC- -5'
13983 5' -56.6 NC_003521.1 + 29985 0.67 0.921961
Target:  5'- -cUGGACGGaggGAGGGGAcGaGCGCCa -3'
miRNA:   3'- gaACCUGUCg--CUCUCCUuCcCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 52196 0.67 0.918707
Target:  5'- --gGGGCGGCGAGcucaucagacaguacGGGGgccgguAGGGCGgCGg -3'
miRNA:   3'- gaaCCUGUCGCUC---------------UCCU------UCCCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 33864 0.67 0.916493
Target:  5'- --gGGAgAuaGAGAGGGAaGGCGCCa -3'
miRNA:   3'- gaaCCUgUcgCUCUCCUUcCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 227587 0.67 0.915933
Target:  5'- --aGGACGGaUGAGgcauggcAGGcuuGGGCGCCGg -3'
miRNA:   3'- gaaCCUGUC-GCUC-------UCCuu-CCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 84780 0.67 0.910802
Target:  5'- gUUGGcACcgccgaAGC-AGAGGGAGGGCACg- -3'
miRNA:   3'- gAACC-UG------UCGcUCUCCUUCCCGUGgc -5'
13983 5' -56.6 NC_003521.1 + 78591 0.67 0.910802
Target:  5'- --cGGugAGCGucgcGGGAAGcggagaGGCACCGa -3'
miRNA:   3'- gaaCCugUCGCuc--UCCUUC------CCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 86267 0.67 0.91022
Target:  5'- --cGGcCGGCGAGGcgaaguuGGggGuGGCGCCc -3'
miRNA:   3'- gaaCCuGUCGCUCU-------CCuuC-CCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 86758 0.67 0.907281
Target:  5'- -cUGGGCAcCGAGAGGcgcGAgagcuugaucuccauGGGCACCa -3'
miRNA:   3'- gaACCUGUcGCUCUCC---UU---------------CCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 17073 0.67 0.904889
Target:  5'- --aGGACgacgAGUGGGAGGAuuuGGGCuuCGa -3'
miRNA:   3'- gaaCCUG----UCGCUCUCCUu--CCCGugGC- -5'
13983 5' -56.6 NC_003521.1 + 148265 0.67 0.904889
Target:  5'- --gGGugGGCGAuuccggguugGGGGAGGGGaaCGCUGg -3'
miRNA:   3'- gaaCCugUCGCU----------CUCCUUCCC--GUGGC- -5'
13983 5' -56.6 NC_003521.1 + 126664 0.67 0.904889
Target:  5'- --cGGGuccgaguagaAGCG-GuGGAAGGGCACCGc -3'
miRNA:   3'- gaaCCUg---------UCGCuCuCCUUCCCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.