miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 180082 0.66 0.851785
Target:  5'- gCGGCGACuGCCGCCGCcgUUCUUGc- -3'
miRNA:   3'- -GUCGCUGcCGGUGGUGuuGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 49578 0.66 0.851785
Target:  5'- -cGCGugGGCCGCgGCGccGCCuCCUc-- -3'
miRNA:   3'- guCGCugCCGGUGgUGU--UGG-GGAcau -5'
13984 3' -58.8 NC_003521.1 + 102675 0.66 0.851785
Target:  5'- aCGGCGAa-GCCGCCggGCAGCaCCCaGUGg -3'
miRNA:   3'- -GUCGCUgcCGGUGG--UGUUG-GGGaCAU- -5'
13984 3' -58.8 NC_003521.1 + 28150 0.67 0.844116
Target:  5'- uGGCGACGGCgGcgaccaugcCCGCGACgCCCUc-- -3'
miRNA:   3'- gUCGCUGCCGgU---------GGUGUUG-GGGAcau -5'
13984 3' -58.8 NC_003521.1 + 108536 0.67 0.844116
Target:  5'- aCGGCGACcuGGUCACC-CGGaCCCUGg- -3'
miRNA:   3'- -GUCGCUG--CCGGUGGuGUUgGGGACau -5'
13984 3' -58.8 NC_003521.1 + 204776 0.67 0.844116
Target:  5'- aCAG-GACGGCCaaaGCCACGugCCg-GUAa -3'
miRNA:   3'- -GUCgCUGCCGG---UGGUGUugGGgaCAU- -5'
13984 3' -58.8 NC_003521.1 + 215506 0.67 0.844116
Target:  5'- -cGUGcCGGCCACCugGaagacgaccGCCCCguagGUGu -3'
miRNA:   3'- guCGCuGCCGGUGGugU---------UGGGGa---CAU- -5'
13984 3' -58.8 NC_003521.1 + 116420 0.67 0.844116
Target:  5'- gCGGCGAUGGCaCGCCGauGCCUCUc-- -3'
miRNA:   3'- -GUCGCUGCCG-GUGGUguUGGGGAcau -5'
13984 3' -58.8 NC_003521.1 + 76768 0.67 0.839429
Target:  5'- aGGCGACcgucgccguggccgaGGCCACCACcaauuCCCCa--- -3'
miRNA:   3'- gUCGCUG---------------CCGGUGGUGuu---GGGGacau -5'
13984 3' -58.8 NC_003521.1 + 83697 0.67 0.836269
Target:  5'- aCAGUGACGGUgACgACGcggACCCaCUGa- -3'
miRNA:   3'- -GUCGCUGCCGgUGgUGU---UGGG-GACau -5'
13984 3' -58.8 NC_003521.1 + 226372 0.67 0.836269
Target:  5'- gAGCGGCGGCUgacgccGCCGCAgGgCCgUGUGc -3'
miRNA:   3'- gUCGCUGCCGG------UGGUGU-UgGGgACAU- -5'
13984 3' -58.8 NC_003521.1 + 109874 0.67 0.836269
Target:  5'- gCGGCGGCggGGCCACCaguaacugcguGCGACCUCg--- -3'
miRNA:   3'- -GUCGCUG--CCGGUGG-----------UGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 59613 0.67 0.836269
Target:  5'- uGGCGGCGGCCccgGCgGCGACCgCg--- -3'
miRNA:   3'- gUCGCUGCCGG---UGgUGUUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 162889 0.67 0.836269
Target:  5'- gCAG-GugGGCCGCUACugccugcagGACgCCCUGUu -3'
miRNA:   3'- -GUCgCugCCGGUGGUG---------UUG-GGGACAu -5'
13984 3' -58.8 NC_003521.1 + 139775 0.67 0.829059
Target:  5'- cCGGCcgucGGCGGCCGCCauggagcugcacggGCGugcccgccaggacgcGCCCCUGUc -3'
miRNA:   3'- -GUCG----CUGCCGGUGG--------------UGU---------------UGGGGACAu -5'
13984 3' -58.8 NC_003521.1 + 197004 0.67 0.828249
Target:  5'- cCGGCGGCGGCUgACC-CGGCUgCUGc- -3'
miRNA:   3'- -GUCGCUGCCGG-UGGuGUUGGgGACau -5'
13984 3' -58.8 NC_003521.1 + 186672 0.67 0.828249
Target:  5'- aGGCGGCGGCCuCUcCAACgCCggcgGUAg -3'
miRNA:   3'- gUCGCUGCCGGuGGuGUUGgGGa---CAU- -5'
13984 3' -58.8 NC_003521.1 + 166 0.67 0.828249
Target:  5'- aCGGCucCGGCCGCCGCuucggccUCCCUGc- -3'
miRNA:   3'- -GUCGcuGCCGGUGGUGuu-----GGGGACau -5'
13984 3' -58.8 NC_003521.1 + 143921 0.67 0.828249
Target:  5'- gGGC-ACGGCgCGCCGCAuCCCCa--- -3'
miRNA:   3'- gUCGcUGCCG-GUGGUGUuGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 209740 0.67 0.828249
Target:  5'- gCAGCGGCaGCCACgGCAGCCggaGUAc -3'
miRNA:   3'- -GUCGCUGcCGGUGgUGUUGGggaCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.