miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13986 3' -54.9 NC_003521.1 + 170307 0.66 0.978389
Target:  5'- cGCGAGGcGGUCACg---UCGG-UGUu -3'
miRNA:   3'- uCGCUCCuCCGGUGaagaAGCCuACG- -5'
13986 3' -54.9 NC_003521.1 + 53173 0.66 0.978389
Target:  5'- cGGCGAGGAGGUCgGCgaCgccgUCGG-UGa -3'
miRNA:   3'- -UCGCUCCUCCGG-UGaaGa---AGCCuACg -5'
13986 3' -54.9 NC_003521.1 + 12342 0.66 0.977471
Target:  5'- --gGAGuGGGGCCGCUacuauaacagcagCUUCuGGGUGCc -3'
miRNA:   3'- ucgCUC-CUCCGGUGAa------------GAAG-CCUACG- -5'
13986 3' -54.9 NC_003521.1 + 187585 0.66 0.976042
Target:  5'- cGCGGGGGcuucgccggcGGUCGCUUCgcccgCGGAcucccgGCg -3'
miRNA:   3'- uCGCUCCU----------CCGGUGAAGaa---GCCUa-----CG- -5'
13986 3' -54.9 NC_003521.1 + 122613 0.66 0.976042
Target:  5'- cGGCGAcggcGGcGGCCGCgcgC-UCGGcgGCc -3'
miRNA:   3'- -UCGCU----CCuCCGGUGaa-GaAGCCuaCG- -5'
13986 3' -54.9 NC_003521.1 + 146873 0.66 0.976042
Target:  5'- cGCGGauGuGAGaGCCACguccgUCUgcauccCGGAUGCg -3'
miRNA:   3'- uCGCU--C-CUC-CGGUGa----AGAa-----GCCUACG- -5'
13986 3' -54.9 NC_003521.1 + 112776 0.66 0.976042
Target:  5'- cGGCGcGucGGCCACUUCUacCGcGUGCg -3'
miRNA:   3'- -UCGCuCcuCCGGUGAAGAa-GCcUACG- -5'
13986 3' -54.9 NC_003521.1 + 139895 0.66 0.974547
Target:  5'- cAGCGcguccagcuucugguAGGAGGCgCGCUgcUCcUCGGG-GCa -3'
miRNA:   3'- -UCGC---------------UCCUCCG-GUGA--AGaAGCCUaCG- -5'
13986 3' -54.9 NC_003521.1 + 148660 0.66 0.974547
Target:  5'- cGGCGGGGAuGGCCGCcaaccacuacacgcUCgUCGGG-GCc -3'
miRNA:   3'- -UCGCUCCU-CCGGUGa-------------AGaAGCCUaCG- -5'
13986 3' -54.9 NC_003521.1 + 190592 0.66 0.973513
Target:  5'- gGGCGAGGAguGGCCccgcgaccugACUucgcgcUCUUCGGgcGg -3'
miRNA:   3'- -UCGCUCCU--CCGG----------UGA------AGAAGCCuaCg -5'
13986 3' -54.9 NC_003521.1 + 131898 0.66 0.970796
Target:  5'- cAGCGAucuGGAGGCCAUccugCUgaaGGA-GCu -3'
miRNA:   3'- -UCGCU---CCUCCGGUGaa--GAag-CCUaCG- -5'
13986 3' -54.9 NC_003521.1 + 101120 0.66 0.970796
Target:  5'- cGCGAGGGGGgCGggUCggCGGGcacGCg -3'
miRNA:   3'- uCGCUCCUCCgGUgaAGaaGCCUa--CG- -5'
13986 3' -54.9 NC_003521.1 + 36777 0.66 0.970796
Target:  5'- cGGCGAcuGGcaGGGCCACgcgCUgCGGAgccGCu -3'
miRNA:   3'- -UCGCU--CC--UCCGGUGaa-GAaGCCUa--CG- -5'
13986 3' -54.9 NC_003521.1 + 143442 0.66 0.970796
Target:  5'- cGGCGAGGucuGGCCGCU-CgaccgccagCGcGUGCu -3'
miRNA:   3'- -UCGCUCCu--CCGGUGAaGaa-------GCcUACG- -5'
13986 3' -54.9 NC_003521.1 + 150642 0.66 0.970514
Target:  5'- aGGCGGGGgcgugcgcgacgaAGGCgGC-UCUcCGGcgGCg -3'
miRNA:   3'- -UCGCUCC-------------UCCGgUGaAGAaGCCuaCG- -5'
13986 3' -54.9 NC_003521.1 + 167169 0.66 0.967885
Target:  5'- gGGCGucuuGGAGGCgGCcgCggCGGAgGCc -3'
miRNA:   3'- -UCGCu---CCUCCGgUGaaGaaGCCUaCG- -5'
13986 3' -54.9 NC_003521.1 + 76976 0.67 0.964774
Target:  5'- uAGuUGAGGAaaGCCACggCUUCGGAcGUg -3'
miRNA:   3'- -UC-GCUCCUc-CGGUGaaGAAGCCUaCG- -5'
13986 3' -54.9 NC_003521.1 + 197432 0.67 0.964774
Target:  5'- aAGCGAaGAGGCCAUggCca-GGcgGCg -3'
miRNA:   3'- -UCGCUcCUCCGGUGaaGaagCCuaCG- -5'
13986 3' -54.9 NC_003521.1 + 237405 0.67 0.964452
Target:  5'- uGGCGGGGGucugaguGGCCcCaUCccCGGAUGCc -3'
miRNA:   3'- -UCGCUCCU-------CCGGuGaAGaaGCCUACG- -5'
13986 3' -54.9 NC_003521.1 + 223993 0.67 0.957931
Target:  5'- cGGCGAGGAcGGUCGgUcCUcaucgaucUCGGAucUGCg -3'
miRNA:   3'- -UCGCUCCU-CCGGUgAaGA--------AGCCU--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.