miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13986 5' -54 NC_003521.1 + 168041 0.66 0.979435
Target:  5'- --cGGGUCuuGGAGCUGUGCCgCCg- -3'
miRNA:   3'- guuCUCGGucUCUUGACACGGaGGau -5'
13986 5' -54 NC_003521.1 + 86395 0.66 0.971891
Target:  5'- gAAGGGCCAGcggucgacgcggGGGACgcgcGUGCCcgccUCCUGa -3'
miRNA:   3'- gUUCUCGGUC------------UCUUGa---CACGG----AGGAU- -5'
13986 5' -54 NC_003521.1 + 29220 0.67 0.965864
Target:  5'- -uGGAGCUcauGGAGAuccucuACUGgGCCUCCa- -3'
miRNA:   3'- guUCUCGG---UCUCU------UGACaCGGAGGau -5'
13986 5' -54 NC_003521.1 + 37200 0.67 0.965864
Target:  5'- gAGGAGCCGGGGGACcgcgGUuaggcgGCCUCg-- -3'
miRNA:   3'- gUUCUCGGUCUCUUGa---CA------CGGAGgau -5'
13986 5' -54 NC_003521.1 + 71122 0.67 0.958981
Target:  5'- gGGGAcGUCGGGGGACUcGUcgccGCCUCCUc -3'
miRNA:   3'- gUUCU-CGGUCUCUUGA-CA----CGGAGGAu -5'
13986 5' -54 NC_003521.1 + 45305 0.67 0.9512
Target:  5'- cCAGGAGCCGGAgcccGAGCUG-GCCgacggCUa- -3'
miRNA:   3'- -GUUCUCGGUCU----CUUGACaCGGa----GGau -5'
13986 5' -54 NC_003521.1 + 98427 0.67 0.946963
Target:  5'- cCAGGgcGGCCAGGGccGCg--GCCUCCUGg -3'
miRNA:   3'- -GUUC--UCGGUCUCu-UGacaCGGAGGAU- -5'
13986 5' -54 NC_003521.1 + 167102 0.68 0.937778
Target:  5'- --cGGGCCAGccgGGGACUGaggaGCCUCCc- -3'
miRNA:   3'- guuCUCGGUC---UCUUGACa---CGGAGGau -5'
13986 5' -54 NC_003521.1 + 131678 0.69 0.916524
Target:  5'- ----cGCUGGAGGACUGcGCCUUCUGc -3'
miRNA:   3'- guucuCGGUCUCUUGACaCGGAGGAU- -5'
13986 5' -54 NC_003521.1 + 206148 0.69 0.904454
Target:  5'- --cGGGCCGGGGAAag--GCCUCCg- -3'
miRNA:   3'- guuCUCGGUCUCUUgacaCGGAGGau -5'
13986 5' -54 NC_003521.1 + 211170 0.69 0.904454
Target:  5'- uGAGAGCCAGcgcccGGAGC-GUGUCUUCUu -3'
miRNA:   3'- gUUCUCGGUC-----UCUUGaCACGGAGGAu -5'
13986 5' -54 NC_003521.1 + 140976 0.7 0.877505
Target:  5'- gCAAGAGCCAcGuAGAGCUG-GCCcucUCCa- -3'
miRNA:   3'- -GUUCUCGGU-C-UCUUGACaCGG---AGGau -5'
13986 5' -54 NC_003521.1 + 164033 0.7 0.870204
Target:  5'- gAGGAGCUGGGGAAUUGguggugGCCUCg-- -3'
miRNA:   3'- gUUCUCGGUCUCUUGACa-----CGGAGgau -5'
13986 5' -54 NC_003521.1 + 17750 0.7 0.84703
Target:  5'- cCGAG-GCCGGGGAACUG-GCCguaCCg- -3'
miRNA:   3'- -GUUCuCGGUCUCUUGACaCGGa--GGau -5'
13986 5' -54 NC_003521.1 + 202204 1.07 0.008016
Target:  5'- uCAAGAGCCAGAGAACUGUGCCUCCUAa -3'
miRNA:   3'- -GUUCUCGGUCUCUUGACACGGAGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.