miRNA display CGI


Results 21 - 40 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 3' -67.9 NC_003521.1 + 138008 0.66 0.501464
Target:  5'- -aUCUCGGCGUCGaGGUgcgcgugcgUCGcuGCCGGCGc -3'
miRNA:   3'- cgGGAGCCGCGGC-CCG---------AGC--CGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 85387 0.66 0.492843
Target:  5'- -gCCUCacaaGCgGCUGcGCUUGGCCGGCAg -3'
miRNA:   3'- cgGGAGc---CG-CGGCcCGAGCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 123201 0.66 0.492843
Target:  5'- gGCCgCauaCGGCGCCGGGUaggacggGGgCGGCGg -3'
miRNA:   3'- -CGG-Ga--GCCGCGGCCCGag-----CCgGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 104120 0.66 0.492843
Target:  5'- aGUCCUCGGCGgcguccugcUCGGGCccgcccugcUCGGUgcucugCGGCGg -3'
miRNA:   3'- -CGGGAGCCGC---------GGCCCG---------AGCCG------GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 111040 0.66 0.492843
Target:  5'- cGgCCUCGGCGCgcacgugcgCGGGacaGGCgCGGUAg -3'
miRNA:   3'- -CgGGAGCCGCG---------GCCCgagCCG-GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 79738 0.66 0.484291
Target:  5'- cGCCgacaCUCGuaccgacaucaGCGCCGGGC-CGGugaggaCCGGCGu -3'
miRNA:   3'- -CGG----GAGC-----------CGCGGCCCGaGCC------GGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 168987 0.66 0.484291
Target:  5'- cGCgCgUCGGuCGCgggaggCGGGCgacggGGCCGGCAc -3'
miRNA:   3'- -CG-GgAGCC-GCG------GCCCGag---CCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 92260 0.66 0.484291
Target:  5'- uCCCUgGGUGCCGcugccGCUacCGGCCGGa- -3'
miRNA:   3'- cGGGAgCCGCGGCc----CGA--GCCGGCCgu -5'
13987 3' -67.9 NC_003521.1 + 36840 0.66 0.48344
Target:  5'- gGCgCUgCuGUGCCGGGUagagcaccugacgUgGGCCGGCAa -3'
miRNA:   3'- -CGgGA-GcCGCGGCCCG-------------AgCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 197279 0.67 0.47581
Target:  5'- cGCCUcugucgCGGCGUCucucGGCUCGGCCGu-- -3'
miRNA:   3'- -CGGGa-----GCCGCGGc---CCGAGCCGGCcgu -5'
13987 3' -67.9 NC_003521.1 + 86162 0.67 0.47581
Target:  5'- aGCgUCUCGcUGCCGGcCUCGGCCagcGGCAc -3'
miRNA:   3'- -CG-GGAGCcGCGGCCcGAGCCGG---CCGU- -5'
13987 3' -67.9 NC_003521.1 + 169453 0.67 0.47581
Target:  5'- cGUCggCGGCGgCGGGUUCGucGCCaGGCGc -3'
miRNA:   3'- -CGGgaGCCGCgGCCCGAGC--CGG-CCGU- -5'
13987 3' -67.9 NC_003521.1 + 164610 0.67 0.467404
Target:  5'- cGCCCagGGCGUgccggCGGGCUucUGGCCcauccuguGGCGc -3'
miRNA:   3'- -CGGGagCCGCG-----GCCCGA--GCCGG--------CCGU- -5'
13987 3' -67.9 NC_003521.1 + 206678 0.67 0.467404
Target:  5'- gGCCUUCGuGCGCgUGGGCcUGGCCcuGCu -3'
miRNA:   3'- -CGGGAGC-CGCG-GCCCGaGCCGGc-CGu -5'
13987 3' -67.9 NC_003521.1 + 85330 0.67 0.467404
Target:  5'- -gCCUUGGC-CCGcGGCccgccgcaGGCCGGCGu -3'
miRNA:   3'- cgGGAGCCGcGGC-CCGag------CCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 68418 0.67 0.467404
Target:  5'- gGUCCcgCGGCGac-GGCUCcGCCGGCGc -3'
miRNA:   3'- -CGGGa-GCCGCggcCCGAGcCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 185202 0.67 0.467404
Target:  5'- cGCCCUCGGUG-UGGGC-CGcGCgGGa- -3'
miRNA:   3'- -CGGGAGCCGCgGCCCGaGC-CGgCCgu -5'
13987 3' -67.9 NC_003521.1 + 27094 0.67 0.467404
Target:  5'- gGCCUucugCGGCGCCGucuGGCUgGGCauccccgaGGCc -3'
miRNA:   3'- -CGGGa---GCCGCGGC---CCGAgCCGg-------CCGu -5'
13987 3' -67.9 NC_003521.1 + 50085 0.67 0.467404
Target:  5'- aCCUUCGGCGUCcagaGGGUugacuUCGGgguCCGGCGu -3'
miRNA:   3'- cGGGAGCCGCGG----CCCG-----AGCC---GGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 224078 0.67 0.467404
Target:  5'- cGUCCUC--CGgCGGGCgcgCGcGCCGGCGg -3'
miRNA:   3'- -CGGGAGccGCgGCCCGa--GC-CGGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.