miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 3' -63.9 NC_003521.1 + 201225 1.09 0.000943
Target:  5'- aGACGCCGCCACCCAGGGCAGGACCGCc -3'
miRNA:   3'- -CUGCGGCGGUGGGUCCCGUCCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 216460 0.82 0.082433
Target:  5'- aGCGaaGCCGCCCAGGGCAGauACCGCg -3'
miRNA:   3'- cUGCggCGGUGGGUCCCGUCc-UGGCG- -5'
13988 3' -63.9 NC_003521.1 + 136670 0.8 0.10754
Target:  5'- cGCGCCGCCGCCgcagagcaccgagCAGGGCGGGcccgagcaggacGCCGCc -3'
miRNA:   3'- cUGCGGCGGUGG-------------GUCCCGUCC------------UGGCG- -5'
13988 3' -63.9 NC_003521.1 + 57744 0.78 0.140358
Target:  5'- aGAuCGCCGUCGCCCAGuaCAGGACCGa -3'
miRNA:   3'- -CU-GCGGCGGUGGGUCccGUCCUGGCg -5'
13988 3' -63.9 NC_003521.1 + 157336 0.78 0.154288
Target:  5'- -cCGCaGCCGCUacGGGCAGGACCGCg -3'
miRNA:   3'- cuGCGgCGGUGGguCCCGUCCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 100437 0.77 0.161714
Target:  5'- aGCGgCGgCGCUCGGGaGCAGGGCCGCc -3'
miRNA:   3'- cUGCgGCgGUGGGUCC-CGUCCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 74618 0.77 0.165546
Target:  5'- -uCGCCGCCGCgCCAacagcGGGguGGugCGCg -3'
miRNA:   3'- cuGCGGCGGUG-GGU-----CCCguCCugGCG- -5'
13988 3' -63.9 NC_003521.1 + 3402 0.77 0.165546
Target:  5'- cGACGCCGgCAUCCGGGGaUGGGGCCa- -3'
miRNA:   3'- -CUGCGGCgGUGGGUCCC-GUCCUGGcg -5'
13988 3' -63.9 NC_003521.1 + 169513 0.77 0.165546
Target:  5'- gGACGCCGCCGcCCCAGGuGCuggugccccagGGGcccguGCCGCg -3'
miRNA:   3'- -CUGCGGCGGU-GGGUCC-CG-----------UCC-----UGGCG- -5'
13988 3' -63.9 NC_003521.1 + 109789 0.77 0.173455
Target:  5'- -cCGCCGCCGCCCAGGaGaCGGGA-CGUg -3'
miRNA:   3'- cuGCGGCGGUGGGUCC-C-GUCCUgGCG- -5'
13988 3' -63.9 NC_003521.1 + 168399 0.76 0.180442
Target:  5'- uGGCGuuGCCGCCguugguggcuagggCGGgcGGCAGGGCCGCg -3'
miRNA:   3'- -CUGCggCGGUGG--------------GUC--CCGUCCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 129651 0.76 0.1817
Target:  5'- cGGCGCCGUCG-CCGGGGCGgccgcgcuaugcGGACCGUc -3'
miRNA:   3'- -CUGCGGCGGUgGGUCCCGU------------CCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 13877 0.76 0.185952
Target:  5'- cGGCGCCGCCAUggauuucgCCggGGGGCccggcgcggagGGGGCCGCg -3'
miRNA:   3'- -CUGCGGCGGUG--------GG--UCCCG-----------UCCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 49799 0.76 0.208544
Target:  5'- aGACGCUGCCGCCCGaauGGCuGGgcGCCGUg -3'
miRNA:   3'- -CUGCGGCGGUGGGUc--CCGuCC--UGGCG- -5'
13988 3' -63.9 NC_003521.1 + 224621 0.75 0.213338
Target:  5'- gGGCGCCGCCACCUcgaAGGGCcagcacucGGACagGCa -3'
miRNA:   3'- -CUGCGGCGGUGGG---UCCCGu-------CCUGg-CG- -5'
13988 3' -63.9 NC_003521.1 + 77004 0.75 0.213338
Target:  5'- uGACGCCGCCGUCCAGGGgCAGcaugcgguugaGGCCGg -3'
miRNA:   3'- -CUGCGGCGGUGGGUCCC-GUC-----------CUGGCg -5'
13988 3' -63.9 NC_003521.1 + 2326 0.75 0.223209
Target:  5'- cGCGCCgGCCuCCUGGGGCugcugacccuGGGCCGCg -3'
miRNA:   3'- cUGCGG-CGGuGGGUCCCGu---------CCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 110831 0.75 0.223209
Target:  5'- cGCGCCGCCGCCggcgCAGcGGCAGcGACgGUg -3'
miRNA:   3'- cUGCGGCGGUGG----GUC-CCGUC-CUGgCG- -5'
13988 3' -63.9 NC_003521.1 + 202554 0.75 0.223209
Target:  5'- cGCGCCgGCCuCCUGGGGCugcugacccuGGGCCGCg -3'
miRNA:   3'- cUGCGG-CGGuGGGUCCCGu---------CCUGGCG- -5'
13988 3' -63.9 NC_003521.1 + 121899 0.75 0.225229
Target:  5'- gGACGCCGCCGCCCacGccgcggcgccgacgaGGGCgAGGACCu- -3'
miRNA:   3'- -CUGCGGCGGUGGG--U---------------CCCG-UCCUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.