miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 5' -59 NC_003521.1 + 154113 0.66 0.869423
Target:  5'- aACCGGcccaucucGC-GGCCGGGcaaGGGCggCAGCGCc -3'
miRNA:   3'- -UGGCU--------CGaCCGGUUC---CCCGa-GUUGCG- -5'
13989 5' -59 NC_003521.1 + 163084 0.66 0.869422
Target:  5'- cGCCGAGgCcGGCCcguccucGGGcGC-CAGCGCc -3'
miRNA:   3'- -UGGCUC-GaCCGGuu-----CCC-CGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 87988 0.66 0.869422
Target:  5'- cACCGAGUUGGaacugaagaCCAGGGcGCU-GACGUg -3'
miRNA:   3'- -UGGCUCGACC---------GGUUCCcCGAgUUGCG- -5'
13989 5' -59 NC_003521.1 + 239761 0.66 0.869422
Target:  5'- gGCgaGAGCUGGCgCAGgucGGuGGCccCGACGCc -3'
miRNA:   3'- -UGg-CUCGACCG-GUU---CC-CCGa-GUUGCG- -5'
13989 5' -59 NC_003521.1 + 141202 0.66 0.868003
Target:  5'- gGCCGuggcGCUGcGCCGccGGGCgcugcaggucacCAACGCg -3'
miRNA:   3'- -UGGCu---CGAC-CGGUucCCCGa-----------GUUGCG- -5'
13989 5' -59 NC_003521.1 + 117886 0.66 0.86729
Target:  5'- gGCCGAGCacGGCCGGGcgcGGaaaaaGCUCAagaaccacggcgguGCGCa -3'
miRNA:   3'- -UGGCUCGa-CCGGUUC---CC-----CGAGU--------------UGCG- -5'
13989 5' -59 NC_003521.1 + 100888 0.66 0.86514
Target:  5'- -aCGAGCUGGCCuuccGGCcgugccccgaggagCAGCGCg -3'
miRNA:   3'- ugGCUCGACCGGuuccCCGa-------------GUUGCG- -5'
13989 5' -59 NC_003521.1 + 138030 0.66 0.862247
Target:  5'- cCCGAGCUggcGGCCGccGGcGCcgUCAucGCGCa -3'
miRNA:   3'- uGGCUCGA---CCGGUucCC-CG--AGU--UGCG- -5'
13989 5' -59 NC_003521.1 + 210414 0.66 0.862247
Target:  5'- gACCGcAGCgUGGUCGgcguGGGcGGCgacggCAGCGUa -3'
miRNA:   3'- -UGGC-UCG-ACCGGU----UCC-CCGa----GUUGCG- -5'
13989 5' -59 NC_003521.1 + 17156 0.66 0.862246
Target:  5'- cCCGAcccuccCUGGCCAAcGGGGCcgaacaauuaAACGCa -3'
miRNA:   3'- uGGCUc-----GACCGGUU-CCCCGag--------UUGCG- -5'
13989 5' -59 NC_003521.1 + 184752 0.66 0.860788
Target:  5'- uGCgCGAGCUGGUgAcGGaGGCcgugaucuggggCAACGCg -3'
miRNA:   3'- -UG-GCUCGACCGgUuCC-CCGa-----------GUUGCG- -5'
13989 5' -59 NC_003521.1 + 196055 0.66 0.854881
Target:  5'- cACCGGGCggaaGGCCGgcgAGGuGGaCU-GGCGCg -3'
miRNA:   3'- -UGGCUCGa---CCGGU---UCC-CC-GAgUUGCG- -5'
13989 5' -59 NC_003521.1 + 49629 0.66 0.85488
Target:  5'- -aCGAGCuccUGGuCCAgcgGGGGGCagUGGCGCu -3'
miRNA:   3'- ugGCUCG---ACC-GGU---UCCCCGa-GUUGCG- -5'
13989 5' -59 NC_003521.1 + 81116 0.66 0.85488
Target:  5'- gGCCGAGaggaUGGCCGAaGGGUUgAucuUGCu -3'
miRNA:   3'- -UGGCUCg---ACCGGUUcCCCGAgUu--GCG- -5'
13989 5' -59 NC_003521.1 + 106017 0.66 0.85488
Target:  5'- -aUGAGCU-GCCA--GGGCUCgGGCGCg -3'
miRNA:   3'- ugGCUCGAcCGGUucCCCGAG-UUGCG- -5'
13989 5' -59 NC_003521.1 + 154293 0.66 0.85488
Target:  5'- aGCgGGGC-GGCaCGGcguccGGGGC-CGACGCg -3'
miRNA:   3'- -UGgCUCGaCCG-GUU-----CCCCGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 130021 0.66 0.85488
Target:  5'- gGCC--GCUGGCUuucagcgucaugGAGGGGCaCGugGCc -3'
miRNA:   3'- -UGGcuCGACCGG------------UUCCCCGaGUugCG- -5'
13989 5' -59 NC_003521.1 + 148378 0.66 0.853385
Target:  5'- aGCCGAGCggggugcggggaGGCUggGGGGUg-AGgGCu -3'
miRNA:   3'- -UGGCUCGa-----------CCGGuuCCCCGagUUgCG- -5'
13989 5' -59 NC_003521.1 + 18520 0.66 0.850372
Target:  5'- cGCUGAaaaagaacaugcuacGCUGGCac-GGGGCUCuGgGCa -3'
miRNA:   3'- -UGGCU---------------CGACCGguuCCCCGAGuUgCG- -5'
13989 5' -59 NC_003521.1 + 54051 0.66 0.84733
Target:  5'- gACUGcGGUUGGUCGucgcagauGGGGUUCcGGCGCa -3'
miRNA:   3'- -UGGC-UCGACCGGUu-------CCCCGAG-UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.