miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 5' -54.5 NC_003521.1 + 207878 0.66 0.968635
Target:  5'- cGCCGUUUCUguuucucgcccuugGGCUCUccg-GCCGCc -3'
miRNA:   3'- cCGGCGAAGA--------------CCGAGAaagaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 14643 0.67 0.963275
Target:  5'- aGCUGCagugcgUCUGGC-CcUUCUGCgCGCUg -3'
miRNA:   3'- cCGGCGa-----AGACCGaGaAAGAUG-GCGA- -5'
13990 5' -54.5 NC_003521.1 + 113716 0.67 0.959839
Target:  5'- cGCUGCUggUGGacCUC-UUCUACCGCc -3'
miRNA:   3'- cCGGCGAagACC--GAGaAAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 156398 0.67 0.959839
Target:  5'- gGGCCGCUUC--GC-CaccCUGCCGCUg -3'
miRNA:   3'- -CCGGCGAAGacCGaGaaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 70127 0.67 0.959839
Target:  5'- gGGCCGCUaUCagGGcCUCgagCUGCgGCg -3'
miRNA:   3'- -CCGGCGA-AGa-CC-GAGaaaGAUGgCGa -5'
13990 5' -54.5 NC_003521.1 + 198457 0.67 0.959127
Target:  5'- uGGCCGUcggCUGGCggugucgacaggCUUUUUGCUGUa -3'
miRNA:   3'- -CCGGCGaa-GACCGa-----------GAAAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 52565 0.67 0.957675
Target:  5'- cGUCGCUUCaucaucaagugcggcUGGCUCaaccgCUGCUGCg -3'
miRNA:   3'- cCGGCGAAG---------------ACCGAGaaa--GAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 121686 0.67 0.952318
Target:  5'- gGGCUcCUUCcacUGGUUCUg-CUGCCGCg -3'
miRNA:   3'- -CCGGcGAAG---ACCGAGAaaGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 97491 0.67 0.952318
Target:  5'- aGCCGCcaUCggUGGCggCUgucUCUACCGCg -3'
miRNA:   3'- cCGGCGa-AG--ACCGa-GAa--AGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 174566 0.67 0.952318
Target:  5'- uGCUGCUgUUGGCUCacgaagUUCUcgcacGCCGCg -3'
miRNA:   3'- cCGGCGAaGACCGAGa-----AAGA-----UGGCGa -5'
13990 5' -54.5 NC_003521.1 + 74405 0.68 0.943906
Target:  5'- cGCCGggUCUGGCUCUac--AUCGCg -3'
miRNA:   3'- cCGGCgaAGACCGAGAaagaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 74074 0.68 0.943906
Target:  5'- cGCCGCUgUCUGGCgggCgaggUCUuccCCGCc -3'
miRNA:   3'- cCGGCGA-AGACCGa--Gaa--AGAu--GGCGa -5'
13990 5' -54.5 NC_003521.1 + 176488 0.68 0.939358
Target:  5'- gGGCCuGCagCUGGCUCa-UCUGCuCGUg -3'
miRNA:   3'- -CCGG-CGaaGACCGAGaaAGAUG-GCGa -5'
13990 5' -54.5 NC_003521.1 + 131447 0.68 0.939358
Target:  5'- -uCCGCgacCUGGC-CUgcCUGCCGCUg -3'
miRNA:   3'- ccGGCGaa-GACCGaGAaaGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 187634 0.68 0.939358
Target:  5'- gGGCCGCgcgccgCUGGCcaUCUUcaUCggcgagggcgGCCGCg -3'
miRNA:   3'- -CCGGCGaa----GACCG--AGAA--AGa---------UGGCGa -5'
13990 5' -54.5 NC_003521.1 + 70654 0.68 0.939358
Target:  5'- cGCUGCggCUGGUgCUgcagCUGCUGCUg -3'
miRNA:   3'- cCGGCGaaGACCGaGAaa--GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 172986 0.68 0.9316
Target:  5'- gGGCCGcCUUCUGGgUCgcggggCUcacuugaggggagcaGCCGCg -3'
miRNA:   3'- -CCGGC-GAAGACCgAGaaa---GA---------------UGGCGa -5'
13990 5' -54.5 NC_003521.1 + 19883 0.68 0.929568
Target:  5'- cGGCCGCgUC-GGCgCUgaucCUGCUGCUg -3'
miRNA:   3'- -CCGGCGaAGaCCGaGAaa--GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 80013 0.68 0.929568
Target:  5'- gGGCgGCUUCUGcugcggcuGCUgUUUCUuguuGCUGCUg -3'
miRNA:   3'- -CCGgCGAAGAC--------CGAgAAAGA----UGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 107654 0.68 0.929568
Target:  5'- aGGCCGCcacugCUGGUgucccggCUGCUGCUg -3'
miRNA:   3'- -CCGGCGaa---GACCGagaaa--GAUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.