miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 3' -61.7 NC_003521.1 + 204638 0.66 0.753545
Target:  5'- -aGCCGcucgGCcaGGUGCGUG-GGCaCGCCg -3'
miRNA:   3'- aaCGGCaa--CG--CCGCGCACgUCG-GCGG- -5'
13991 3' -61.7 NC_003521.1 + 150938 0.66 0.753545
Target:  5'- -gGCCGagcGCGGUcagaucauCGUGCAGUCGCg -3'
miRNA:   3'- aaCGGCaa-CGCCGc-------GCACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 111374 0.66 0.753545
Target:  5'- -cGCCGggacuaGCGGCGaCGgaggggacgcgcUGCAGCgGCUc -3'
miRNA:   3'- aaCGGCaa----CGCCGC-GC------------ACGUCGgCGG- -5'
13991 3' -61.7 NC_003521.1 + 122049 0.66 0.753545
Target:  5'- -aGCgaGaUGCagGGCGaCGUGCgcacGGCCGCCg -3'
miRNA:   3'- aaCGg-CaACG--CCGC-GCACG----UCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 40718 0.66 0.753545
Target:  5'- gUGCUGgcgcGCGGCuGUGacUGCAGCUGUg -3'
miRNA:   3'- aACGGCaa--CGCCG-CGC--ACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 30228 0.66 0.753545
Target:  5'- aUUGCUGcUGaCGG-GCGUGgauacCGGCCGCUa -3'
miRNA:   3'- -AACGGCaAC-GCCgCGCAC-----GUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 37419 0.66 0.753545
Target:  5'- cUGaCCG-UGUGGCGCG-GC-GCCgaGCCu -3'
miRNA:   3'- aAC-GGCaACGCCGCGCaCGuCGG--CGG- -5'
13991 3' -61.7 NC_003521.1 + 97598 0.66 0.753545
Target:  5'- gUGCuCGUUGgagcaGGUGCaGUGCAcGUCGUCg -3'
miRNA:   3'- aACG-GCAACg----CCGCG-CACGU-CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 74577 0.66 0.753545
Target:  5'- -gGCgaCGgagcgGCGGCGCGgcgucccGCGGCCGgCg -3'
miRNA:   3'- aaCG--GCaa---CGCCGCGCa------CGUCGGCgG- -5'
13991 3' -61.7 NC_003521.1 + 396 0.66 0.753545
Target:  5'- gUGCUGgcgcGCGGCuGUGacUGCAGCUGUg -3'
miRNA:   3'- aACGGCaa--CGCCG-CGC--ACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 88242 0.66 0.751725
Target:  5'- -aGCCGaaguagcgcuugUGCGGCGCcagcuugaccgaGUGCuGGCUGUCg -3'
miRNA:   3'- aaCGGCa-----------ACGCCGCG------------CACG-UCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 122609 0.66 0.750813
Target:  5'- uUUGCUGUUGUuccugcgucggcucGGCGCucaaCAGCCGCa -3'
miRNA:   3'- -AACGGCAACG--------------CCGCGcac-GUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 76526 0.66 0.744408
Target:  5'- cUGuuGUUGUGGCuGCugcUGCGGUgGCUg -3'
miRNA:   3'- aACggCAACGCCG-CGc--ACGUCGgCGG- -5'
13991 3' -61.7 NC_003521.1 + 228238 0.66 0.744408
Target:  5'- -cGCUGgucGUGGUGgGUGCcGCCGUg -3'
miRNA:   3'- aaCGGCaa-CGCCGCgCACGuCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 45431 0.66 0.744408
Target:  5'- -cGCCGU--CGGCGCG-GUcauGGCCucGCCg -3'
miRNA:   3'- aaCGGCAacGCCGCGCaCG---UCGG--CGG- -5'
13991 3' -61.7 NC_003521.1 + 122851 0.66 0.744408
Target:  5'- -aGCuCGUcGUaGCGCugGUGCuGGCCGCCg -3'
miRNA:   3'- aaCG-GCAaCGcCGCG--CACG-UCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 206295 0.66 0.744408
Target:  5'- cUGUCGccGCucGCGCGUcucggcccGCGGCCGCUa -3'
miRNA:   3'- aACGGCaaCGc-CGCGCA--------CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 120243 0.66 0.744408
Target:  5'- -aGCCGgcgGCcGCGcCGUGCA-UCGCCu -3'
miRNA:   3'- aaCGGCaa-CGcCGC-GCACGUcGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 236253 0.66 0.744408
Target:  5'- --aCCGgagGcCGGCGUGUGCcccGGCCGUa -3'
miRNA:   3'- aacGGCaa-C-GCCGCGCACG---UCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 104237 0.66 0.744408
Target:  5'- gUGCCGagUGaucgagcaccaGGUGCagcgGCAGCUGCCa -3'
miRNA:   3'- aACGGCa-ACg----------CCGCGca--CGUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.