miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 5' -57 NC_003521.1 + 95090 0.67 0.878454
Target:  5'- gGGGCucGGGcGcCUUGAGCGGCcGCg-- -3'
miRNA:   3'- gCCCG--UCCaC-GAACUCGUCGuCGaaa -5'
13991 5' -57 NC_003521.1 + 219067 0.67 0.878454
Target:  5'- aCGGcGCccAGGUGCaUGAGCAGCgagaccuguucgGGCa-- -3'
miRNA:   3'- -GCC-CG--UCCACGaACUCGUCG------------UCGaaa -5'
13991 5' -57 NC_003521.1 + 120893 0.67 0.878454
Target:  5'- cCGuGCAGGUGgUcggGGGCGGCuGCUUg -3'
miRNA:   3'- -GCcCGUCCACgAa--CUCGUCGuCGAAa -5'
13991 5' -57 NC_003521.1 + 176266 0.67 0.871278
Target:  5'- uGcGCAGGaugGUgUUGAGCAGCAGCa-- -3'
miRNA:   3'- gCcCGUCCa--CG-AACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 67062 0.67 0.871278
Target:  5'- uCGGGCgAGGagGUagaggagGAGCAGCAGCc-- -3'
miRNA:   3'- -GCCCG-UCCa-CGaa-----CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 113181 0.67 0.864639
Target:  5'- uGGGCcgcgAGGUGCccgucuucgugcacGAGCAGCAGUa-- -3'
miRNA:   3'- gCCCG----UCCACGaa------------CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 164209 0.67 0.856299
Target:  5'- -cGGCGGGgcgGCggugGuAGCGGCGGCUg- -3'
miRNA:   3'- gcCCGUCCa--CGaa--C-UCGUCGUCGAaa -5'
13991 5' -57 NC_003521.1 + 127374 0.67 0.856299
Target:  5'- gCGcGGCAGGUGCgugaugaaGGGCGGCcacaGGCg-- -3'
miRNA:   3'- -GC-CCGUCCACGaa------CUCGUCG----UCGaaa -5'
13991 5' -57 NC_003521.1 + 184044 0.67 0.856299
Target:  5'- uGGGCGGccaugugcaaGUGgaUGAGCAGCcugAGCUg- -3'
miRNA:   3'- gCCCGUC----------CACgaACUCGUCG---UCGAaa -5'
13991 5' -57 NC_003521.1 + 137174 0.67 0.856299
Target:  5'- aGGGcCAGGUGCUgcUGAGCA-UGGCc-- -3'
miRNA:   3'- gCCC-GUCCACGA--ACUCGUcGUCGaaa -5'
13991 5' -57 NC_003521.1 + 163890 0.67 0.853982
Target:  5'- gGaGGCAGGUGCcgacggUGcguuacucgggugcGGCGGCAGCg-- -3'
miRNA:   3'- gC-CCGUCCACGa-----AC--------------UCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 119516 0.68 0.832351
Target:  5'- cCGGGuCAGGUGCggguacgggUUGuGCcGCAGCa-- -3'
miRNA:   3'- -GCCC-GUCCACG---------AACuCGuCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 168422 0.68 0.824
Target:  5'- aGGGCGGGcgGCagGGccGCGGCGGCg-- -3'
miRNA:   3'- gCCCGUCCa-CGaaCU--CGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 126505 0.68 0.824
Target:  5'- gGGGCAGGUGgccGAGUAGC-GCg-- -3'
miRNA:   3'- gCCCGUCCACgaaCUCGUCGuCGaaa -5'
13991 5' -57 NC_003521.1 + 103777 0.68 0.824
Target:  5'- cCGGGC-GGUGCcUGAGuCAGCcGCc-- -3'
miRNA:   3'- -GCCCGuCCACGaACUC-GUCGuCGaaa -5'
13991 5' -57 NC_003521.1 + 70246 0.68 0.815478
Target:  5'- -aGGCAGGgcgaGCUggUGGGguGCAGCa-- -3'
miRNA:   3'- gcCCGUCCa---CGA--ACUCguCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 118741 0.68 0.788962
Target:  5'- aCGGGCugcAGGuUGCUggUGAGuCGGCGGCc-- -3'
miRNA:   3'- -GCCCG---UCC-ACGA--ACUC-GUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 155579 0.68 0.787147
Target:  5'- aGGaGguGGUGCagcagcaacgaGAGCAGCAGCa-- -3'
miRNA:   3'- gCC-CguCCACGaa---------CUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 38215 0.69 0.770576
Target:  5'- uCGGGCAGGagGCgcaGGGCGGCcucGGCg-- -3'
miRNA:   3'- -GCCCGUCCa-CGaa-CUCGUCG---UCGaaa -5'
13991 5' -57 NC_003521.1 + 238443 0.69 0.770576
Target:  5'- uCGGGCAGGagGCgcaGGGCGGCcucGGCg-- -3'
miRNA:   3'- -GCCCGUCCa-CGaa-CUCGUCG---UCGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.