miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 3' -62.3 NC_003521.1 + 137599 0.67 0.695986
Target:  5'- uUGGGCCGCC-GCcUGGCCgGCgaccucauccAGGUc -3'
miRNA:   3'- gACCCGGUGGcCGaACUGGgCG----------UCCA- -5'
13992 3' -62.3 NC_003521.1 + 120538 0.67 0.695042
Target:  5'- -aGGGCCcucggcgGCCGGCggu-CCCGgGGGa -3'
miRNA:   3'- gaCCCGG-------UGGCCGaacuGGGCgUCCa -5'
13992 3' -62.3 NC_003521.1 + 92145 0.67 0.690317
Target:  5'- -cGGGgcuucccggcuccuuCCACCGGCUc-GCCCGgGGGUc -3'
miRNA:   3'- gaCCC---------------GGUGGCCGAacUGGGCgUCCA- -5'
13992 3' -62.3 NC_003521.1 + 143604 0.67 0.686528
Target:  5'- gCUGacGGCCACCGGCUgcuGCCUGCu--- -3'
miRNA:   3'- -GAC--CCGGUGGCCGAac-UGGGCGucca -5'
13992 3' -62.3 NC_003521.1 + 128525 0.67 0.686528
Target:  5'- gCUGGGCaggugCGGC-UGGCCCGacguCAGGUg -3'
miRNA:   3'- -GACCCGgug--GCCGaACUGGGC----GUCCA- -5'
13992 3' -62.3 NC_003521.1 + 124251 0.67 0.686528
Target:  5'- uUGGGUCGCCGcgcggcauGCUUGGugUCUGCGGGc -3'
miRNA:   3'- gACCCGGUGGC--------CGAACU--GGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 185581 0.67 0.686528
Target:  5'- -cGGGCuCGCCGGC--GAgCCGCucGGGg -3'
miRNA:   3'- gaCCCG-GUGGCCGaaCUgGGCG--UCCa -5'
13992 3' -62.3 NC_003521.1 + 166085 0.67 0.677032
Target:  5'- -aGGGCCAUagCGGgagcgGGCCgGCAGGUu -3'
miRNA:   3'- gaCCCGGUG--GCCgaa--CUGGgCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 5846 0.67 0.667502
Target:  5'- gCUGGGaCCGCacguaGGCcucgUUGGUCCGCAGGc -3'
miRNA:   3'- -GACCC-GGUGg----CCG----AACUGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 207049 0.67 0.657948
Target:  5'- gCUGGGCCGCaGGCcggaGGCgUUGCAGGg -3'
miRNA:   3'- -GACCCGGUGgCCGaa--CUG-GGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 152029 0.67 0.656034
Target:  5'- -cGGGCUucaccagGCCGcagcgguGCUUcACCCGCAGGUc -3'
miRNA:   3'- gaCCCGG-------UGGC-------CGAAcUGGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 28355 0.68 0.638791
Target:  5'- gUGGGCCACgGGCcUGGCCUGg---- -3'
miRNA:   3'- gACCCGGUGgCCGaACUGGGCgucca -5'
13992 3' -62.3 NC_003521.1 + 75996 0.68 0.638791
Target:  5'- --cGGCCGCCGGUUccuccuccCCCGCGGGc -3'
miRNA:   3'- gacCCGGUGGCCGAacu-----GGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 119594 0.68 0.638791
Target:  5'- gCUGGGCgGCgGGUgcagcgucucGugCUGCAGGUg -3'
miRNA:   3'- -GACCCGgUGgCCGaa--------CugGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 195527 0.68 0.638791
Target:  5'- -cGGGCU-CCGGCUccUGGCCCaGCGGc- -3'
miRNA:   3'- gaCCCGGuGGCCGA--ACUGGG-CGUCca -5'
13992 3' -62.3 NC_003521.1 + 128137 0.68 0.637832
Target:  5'- -aGGGCgGCCcgcgcucGGCgaaGGCCUGCAGGc -3'
miRNA:   3'- gaCCCGgUGG-------CCGaa-CUGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 48650 0.68 0.629203
Target:  5'- gUGuGGCCgcgACCGGCgcUGACaCCGCAGa- -3'
miRNA:   3'- gAC-CCGG---UGGCCGa-ACUG-GGCGUCca -5'
13992 3' -62.3 NC_003521.1 + 197358 0.68 0.629203
Target:  5'- --cGGCCGCCGcGC-UGGCCCGCugugagaguuccAGGg -3'
miRNA:   3'- gacCCGGUGGC-CGaACUGGGCG------------UCCa -5'
13992 3' -62.3 NC_003521.1 + 120592 0.68 0.619616
Target:  5'- -cGcGGCCGCCGGCU---CCUGCcGGUa -3'
miRNA:   3'- gaC-CCGGUGGCCGAacuGGGCGuCCA- -5'
13992 3' -62.3 NC_003521.1 + 182350 0.68 0.619616
Target:  5'- uCUGGGCCAUUGGCa-GACCCu--GGUc -3'
miRNA:   3'- -GACCCGGUGGCCGaaCUGGGcguCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.