miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 5' -54.2 NC_003521.1 + 157591 0.67 0.97543
Target:  5'- cGAUCUGGucAAGUgCGCCGaGGGCaCCg -3'
miRNA:   3'- cCUAGACC--UUCAgGUGGUcCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 152301 0.66 0.988652
Target:  5'- -----cGGA---UCAUCAGGGACUCCa -3'
miRNA:   3'- ccuagaCCUucaGGUGGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 151601 0.69 0.940865
Target:  5'- cGcgCUGGAGGUCgGCC--GGugUCCc -3'
miRNA:   3'- cCuaGACCUUCAGgUGGucCCugAGG- -5'
13992 5' -54.2 NC_003521.1 + 150696 0.66 0.982037
Target:  5'- cGGG-CUGGGA-UCCGCCcacuaGGGGGCguaCCu -3'
miRNA:   3'- -CCUaGACCUUcAGGUGG-----UCCCUGa--GG- -5'
13992 5' -54.2 NC_003521.1 + 150205 0.66 0.988652
Target:  5'- cGGGccuUCUGGcAGGUCCACagccugcuGGGcuacauCUCCg -3'
miRNA:   3'- -CCU---AGACC-UUCAGGUGgu------CCCu-----GAGG- -5'
13992 5' -54.2 NC_003521.1 + 149440 0.71 0.863252
Target:  5'- uGGGUC-GGggGUCCGggcCCGGGGuucggccccCUCCc -3'
miRNA:   3'- -CCUAGaCCuuCAGGU---GGUCCCu--------GAGG- -5'
13992 5' -54.2 NC_003521.1 + 148764 0.66 0.985634
Target:  5'- uGGAUCUGGGugcccucggcGGUCgCGCCGaGGAg-CCg -3'
miRNA:   3'- -CCUAGACCU----------UCAG-GUGGUcCCUgaGG- -5'
13992 5' -54.2 NC_003521.1 + 148119 0.66 0.988652
Target:  5'- uGGAUcCUGGGAccucaucguGUC--CCAGGGAC-CCg -3'
miRNA:   3'- -CCUA-GACCUU---------CAGguGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 144128 0.67 0.972875
Target:  5'- cGGcCUGGAcgaGGUgCGCCuGGG-CUCCg -3'
miRNA:   3'- cCUaGACCU---UCAgGUGGuCCCuGAGG- -5'
13992 5' -54.2 NC_003521.1 + 135694 0.68 0.953437
Target:  5'- gGGAcCUcGGggGUCUGCCucAGGaGGCUCa -3'
miRNA:   3'- -CCUaGA-CCuuCAGGUGG--UCC-CUGAGg -5'
13992 5' -54.2 NC_003521.1 + 130096 0.66 0.988652
Target:  5'- cGcgCUGGuc-UCCACCcGGGACcugCCg -3'
miRNA:   3'- cCuaGACCuucAGGUGGuCCCUGa--GG- -5'
13992 5' -54.2 NC_003521.1 + 126664 0.66 0.988514
Target:  5'- cGGGUCcgaguagaagcggUGGAAGggcaCCGCCAGGcaguACUCg -3'
miRNA:   3'- -CCUAG-------------ACCUUCa---GGUGGUCCc---UGAGg -5'
13992 5' -54.2 NC_003521.1 + 120722 0.73 0.798609
Target:  5'- uGGccCUGGAccguGG-CCACCAGGGGCaCCa -3'
miRNA:   3'- -CCuaGACCU----UCaGGUGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 109474 0.68 0.967201
Target:  5'- -cGUCUGGGAacaugCgCGCCAGGcGCUCCa -3'
miRNA:   3'- ccUAGACCUUca---G-GUGGUCCcUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 108615 0.68 0.953437
Target:  5'- aGGAUCuUGGGcacguuGUUgGCCAGGcGGCUgCCg -3'
miRNA:   3'- -CCUAG-ACCUu-----CAGgUGGUCC-CUGA-GG- -5'
13992 5' -54.2 NC_003521.1 + 103610 0.66 0.981841
Target:  5'- gGGAUCUgaaagaaGGgcGUCCcgGCCGccGACUCCa -3'
miRNA:   3'- -CCUAGA-------CCuuCAGG--UGGUccCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 100846 0.66 0.987211
Target:  5'- aGGGUCggUGaGAGGcUCCgGCCGGGacuGCUCCa -3'
miRNA:   3'- -CCUAG--AC-CUUC-AGG-UGGUCCc--UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 100117 0.66 0.982037
Target:  5'- aGGAUgcgaccccgcggCUGGcGGUCCugCGggaaggccguGGGGCUCUu -3'
miRNA:   3'- -CCUA------------GACCuUCAGGugGU----------CCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 92038 0.8 0.402254
Target:  5'- uGGGUCcGGggGUCC-CCGGGGugcCUCCc -3'
miRNA:   3'- -CCUAGaCCuuCAGGuGGUCCCu--GAGG- -5'
13992 5' -54.2 NC_003521.1 + 91065 0.68 0.960735
Target:  5'- uGGAUCUcGGuuGUCCGgacaacgcaaCAGGGGC-CCg -3'
miRNA:   3'- -CCUAGA-CCuuCAGGUg---------GUCCCUGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.