Results 21 - 40 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 144128 | 0.67 | 0.972875 |
Target: 5'- cGGcCUGGAcgaGGUgCGCCuGGG-CUCCg -3' miRNA: 3'- cCUaGACCU---UCAgGUGGuCCCuGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 205200 | 0.67 | 0.972875 |
Target: 5'- aGGGUCcGGAGGcCCGuCCAGGGcCg-- -3' miRNA: 3'- -CCUAGaCCUUCaGGU-GGUCCCuGagg -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 167113 | 0.67 | 0.970135 |
Target: 5'- gGGA-CUGaGGAGccUCC-CUGGGGACUUCg -3' miRNA: 3'- -CCUaGAC-CUUC--AGGuGGUCCCUGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 172207 | 0.67 | 0.970135 |
Target: 5'- gGGcgCccaGGAAGUCCACgGGGGugGCaCCg -3' miRNA: 3'- -CCuaGa--CCUUCAGGUGgUCCC--UGaGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 39927 | 0.67 | 0.970135 |
Target: 5'- aGAUgUGGAuGUCCuccGCCAGcaGCUCCa -3' miRNA: 3'- cCUAgACCUuCAGG---UGGUCccUGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 235352 | 0.67 | 0.970135 |
Target: 5'- gGGA-CUGGAAGUCgcacgcgcucuuCACCAucuGGGACgggauggagUCCg -3' miRNA: 3'- -CCUaGACCUUCAG------------GUGGU---CCCUG---------AGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 71949 | 0.68 | 0.967201 |
Target: 5'- --uUCgc-AAGUCCGCCAGGGACg-- -3' miRNA: 3'- ccuAGaccUUCAGGUGGUCCCUGagg -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 176729 | 0.68 | 0.967201 |
Target: 5'- --uUCUGGAAGcCCGCCuccaggccGGGCUCg -3' miRNA: 3'- ccuAGACCUUCaGGUGGuc------CCUGAGg -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 216383 | 0.68 | 0.967201 |
Target: 5'- aGGGcugcCUcGGgcGUCCAC--GGGACUCCg -3' miRNA: 3'- -CCUa---GA-CCuuCAGGUGguCCCUGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 109474 | 0.68 | 0.967201 |
Target: 5'- -cGUCUGGGAacaugCgCGCCAGGcGCUCCa -3' miRNA: 3'- ccUAGACCUUca---G-GUGGUCCcUGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 86333 | 0.68 | 0.966897 |
Target: 5'- uGGAUgCUGGAGGUCUugccggcGCCGGcGGug-CCg -3' miRNA: 3'- -CCUA-GACCUUCAGG-------UGGUC-CCugaGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 56024 | 0.68 | 0.960735 |
Target: 5'- -aGUC-GGAGGcggCCACCAGGGcgUCCa -3' miRNA: 3'- ccUAGaCCUUCa--GGUGGUCCCugAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 91065 | 0.68 | 0.960735 |
Target: 5'- uGGAUCUcGGuuGUCCGgacaacgcaaCAGGGGC-CCg -3' miRNA: 3'- -CCUAGA-CCuuCAGGUg---------GUCCCUGaGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 4548 | 0.68 | 0.957192 |
Target: 5'- aGGGUCcccgGGGAGUCacuacgGCCGGGGcACacgCCg -3' miRNA: 3'- -CCUAGa---CCUUCAGg-----UGGUCCC-UGa--GG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 135694 | 0.68 | 0.953437 |
Target: 5'- gGGAcCUcGGggGUCUGCCucAGGaGGCUCa -3' miRNA: 3'- -CCUaGA-CCuuCAGGUGG--UCC-CUGAGg -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 176855 | 0.68 | 0.953437 |
Target: 5'- aGGAUCUGGuuauGGcgCCgcGCCAGcaGCUCCa -3' miRNA: 3'- -CCUAGACCu---UCa-GG--UGGUCccUGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 108615 | 0.68 | 0.953437 |
Target: 5'- aGGAUCuUGGGcacguuGUUgGCCAGGcGGCUgCCg -3' miRNA: 3'- -CCUAG-ACCUu-----CAGgUGGUCC-CUGA-GG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 204243 | 0.69 | 0.945276 |
Target: 5'- aGGggCUGGAGGaUCAC--GGGACUCUc -3' miRNA: 3'- -CCuaGACCUUCaGGUGguCCCUGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 73700 | 0.69 | 0.945276 |
Target: 5'- --cUCUaaGcGAAGUCC-CCAGGGagGCUCCu -3' miRNA: 3'- ccuAGA--C-CUUCAGGuGGUCCC--UGAGG- -5' |
|||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 72144 | 0.69 | 0.945276 |
Target: 5'- -----aGGAcGgccugCCACCAGGGACcUCCg -3' miRNA: 3'- ccuagaCCUuCa----GGUGGUCCCUG-AGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home