miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 3' -56.7 NC_003521.1 + 103124 0.66 0.912273
Target:  5'- aGCUggCGCAGcGCGCggCGgugCUGCAGCa -3'
miRNA:   3'- gUGG--GUGUC-CGCGuaGUa--GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 137978 0.66 0.912273
Target:  5'- cUACgCCACGGGCGCccuggCGcgcuUCUcGCAGCg -3'
miRNA:   3'- -GUG-GGUGUCCGCGua---GU----AGA-CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 205329 0.66 0.912273
Target:  5'- aCACCCuAC-GGCGCcUCcUCgGCGGCg -3'
miRNA:   3'- -GUGGG-UGuCCGCGuAGuAGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 175770 0.66 0.912273
Target:  5'- aAUUCguGCAGGCGCGUCAUUaGCcggGGCUg -3'
miRNA:   3'- gUGGG--UGUCCGCGUAGUAGaCG---UCGA- -5'
13993 3' -56.7 NC_003521.1 + 63355 0.66 0.912273
Target:  5'- -cUCCACGGccGCGCAgacCGUCaGCAGCUu -3'
miRNA:   3'- guGGGUGUC--CGCGUa--GUAGaCGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 130490 0.66 0.911688
Target:  5'- aCACCgcgagCGCGGcCGCGUCAUgauggccCUGCGGCUg -3'
miRNA:   3'- -GUGG-----GUGUCcGCGUAGUA-------GACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 239850 0.67 0.906323
Target:  5'- gUugUCGguGGCGCGgaagcccauUCcUCUGCAGCg -3'
miRNA:   3'- -GugGGUguCCGCGU---------AGuAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 55940 0.67 0.906323
Target:  5'- aGCCC--AGGCGCAUgagcacCGUgUGCAGCc -3'
miRNA:   3'- gUGGGugUCCGCGUA------GUAgACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 58875 0.67 0.906323
Target:  5'- gGCCCACGagagguGGCGCGgcgaGUC-GCAGCc -3'
miRNA:   3'- gUGGGUGU------CCGCGUag--UAGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 188760 0.67 0.906323
Target:  5'- gUACCgGCcc-CGCGUCAUCUGCcGCUg -3'
miRNA:   3'- -GUGGgUGuccGCGUAGUAGACGuCGA- -5'
13993 3' -56.7 NC_003521.1 + 95206 0.67 0.906323
Target:  5'- aCGCCCGgcacCGGGUGCGa---CUGCAGCa -3'
miRNA:   3'- -GUGGGU----GUCCGCGUaguaGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 42647 0.67 0.906323
Target:  5'- gCAgCCGCgguguAGGCGUA-CGUCUGCuGCa -3'
miRNA:   3'- -GUgGGUG-----UCCGCGUaGUAGACGuCGa -5'
13993 3' -56.7 NC_003521.1 + 190291 0.67 0.905715
Target:  5'- aAUCCACgugucuuGGGCGCGUCAUgUcCGGCg -3'
miRNA:   3'- gUGGGUG-------UCCGCGUAGUAgAcGUCGa -5'
13993 3' -56.7 NC_003521.1 + 63862 0.67 0.902643
Target:  5'- gGCCCugAcacgguggacgaggcGGCGCGcCGggagCUGCAGCa -3'
miRNA:   3'- gUGGGugU---------------CCGCGUaGUa---GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 210977 0.67 0.900146
Target:  5'- -gUCC-CGGGCGUgaacaguccGUgCAUCUGCAGCg -3'
miRNA:   3'- guGGGuGUCCGCG---------UA-GUAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 30836 0.67 0.900146
Target:  5'- aACuCCACGGGCGCcuugCGaCgGCAGCg -3'
miRNA:   3'- gUG-GGUGUCCGCGua--GUaGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 220160 0.67 0.900145
Target:  5'- cCGCUCAUcgagGGGUGCcUCAUCaUGCGGUa -3'
miRNA:   3'- -GUGGGUG----UCCGCGuAGUAG-ACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 90389 0.67 0.900145
Target:  5'- gACCC-CGGGCGCGcUCucCUGCAcGCg -3'
miRNA:   3'- gUGGGuGUCCGCGU-AGuaGACGU-CGa -5'
13993 3' -56.7 NC_003521.1 + 120361 0.67 0.900145
Target:  5'- aCACCUGCGGacgucGCuGUAUUAUUUGCGGCg -3'
miRNA:   3'- -GUGGGUGUC-----CG-CGUAGUAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 27272 0.67 0.899516
Target:  5'- gGCCCACgaaggccAGGCGgGUC-UC-GCAGCa -3'
miRNA:   3'- gUGGGUG-------UCCGCgUAGuAGaCGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.