miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 211039 0.73 0.536108
Target:  5'- aCAGCUGCAGGUGaaaUG-GCUGACCu -3'
miRNA:   3'- cGUCGACGUCCACagcGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 209853 0.68 0.835399
Target:  5'- cGCAGCUGCugcuGcGUGcCGaGCGcCUGGCUu -3'
miRNA:   3'- -CGUCGACGu---C-CACaGCgCGC-GACUGG- -5'
13993 5' -58 NC_003521.1 + 208900 0.67 0.865673
Target:  5'- aGgAGC-GCgAGGUcaUCGCGCGCUGccuGCCg -3'
miRNA:   3'- -CgUCGaCG-UCCAc-AGCGCGCGAC---UGG- -5'
13993 5' -58 NC_003521.1 + 208426 0.68 0.835399
Target:  5'- -gGGCUGCu-GUGUCGCaCGCccgagGACCu -3'
miRNA:   3'- cgUCGACGucCACAGCGcGCGa----CUGG- -5'
13993 5' -58 NC_003521.1 + 207553 0.66 0.91106
Target:  5'- cGCAGCUGCugcacgaUCGCGCcggccuGCUGGCg -3'
miRNA:   3'- -CGUCGACGuccac--AGCGCG------CGACUGg -5'
13993 5' -58 NC_003521.1 + 207137 0.67 0.872772
Target:  5'- cCAGCUGCAGc-GUUaCGUGCgGGCCa -3'
miRNA:   3'- cGUCGACGUCcaCAGcGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 203524 0.71 0.691864
Target:  5'- cGCGGCUGguGGUugaaguggauGUCGUaggGCGCgUGcACCg -3'
miRNA:   3'- -CGUCGACguCCA----------CAGCG---CGCG-AC-UGG- -5'
13993 5' -58 NC_003521.1 + 201846 0.7 0.699593
Target:  5'- cGCcuguGCUGCGGGUGgcuguuucugggCGuCGUGCUGcCCa -3'
miRNA:   3'- -CGu---CGACGUCCACa-----------GC-GCGCGACuGG- -5'
13993 5' -58 NC_003521.1 + 198795 0.7 0.748833
Target:  5'- aGCAGCUGCGuGGUGcCGgCgGCGuCUGucguGCCg -3'
miRNA:   3'- -CGUCGACGU-CCACaGC-G-CGC-GAC----UGG- -5'
13993 5' -58 NC_003521.1 + 198193 0.66 0.889641
Target:  5'- cGCGGCUGCugacguguucccagcGGcccguaccgucacgcUGUCGCGCuaucaauaGCUGGCUg -3'
miRNA:   3'- -CGUCGACGu--------------CC---------------ACAGCGCG--------CGACUGG- -5'
13993 5' -58 NC_003521.1 + 197720 0.74 0.517214
Target:  5'- cGCAGC-GCuuGGUcagcucGUCGCGCGCguaGGCCa -3'
miRNA:   3'- -CGUCGaCGu-CCA------CAGCGCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 197347 0.67 0.872772
Target:  5'- cGCGGCcaGCAcGGc--CGcCGCGCUGGCCc -3'
miRNA:   3'- -CGUCGa-CGU-CCacaGC-GCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 196989 0.66 0.916695
Target:  5'- cCAcCUGCAGGUGUCGCcaGUGaa-GCCg -3'
miRNA:   3'- cGUcGACGUCCACAGCG--CGCgacUGG- -5'
13993 5' -58 NC_003521.1 + 196230 1.14 0.001375
Target:  5'- cGCAGCUGCAGGUGUCGCGCGCUGACCa -3'
miRNA:   3'- -CGUCGACGUCCACAGCGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 193163 0.67 0.88637
Target:  5'- gGCGucuGCUGCuGcUGUUGCGCaGCUGccGCCa -3'
miRNA:   3'- -CGU---CGACGuCcACAGCGCG-CGAC--UGG- -5'
13993 5' -58 NC_003521.1 + 187615 0.66 0.916695
Target:  5'- aCGGcCUGCcGGgcgagccgGgccgCGCGcCGCUGGCCa -3'
miRNA:   3'- cGUC-GACGuCCa-------Ca---GCGC-GCGACUGG- -5'
13993 5' -58 NC_003521.1 + 186922 0.67 0.879672
Target:  5'- aGC-GCUGCAGGacgaGCGCG-UGACUg -3'
miRNA:   3'- -CGuCGACGUCCacagCGCGCgACUGG- -5'
13993 5' -58 NC_003521.1 + 183916 0.67 0.865673
Target:  5'- cGguGCUGCGGcGcUGUCGCGac--GGCCa -3'
miRNA:   3'- -CguCGACGUC-C-ACAGCGCgcgaCUGG- -5'
13993 5' -58 NC_003521.1 + 181346 0.73 0.545645
Target:  5'- uGUAGCUGCAGcGUGaUUGuCGCGCccgGAUCg -3'
miRNA:   3'- -CGUCGACGUC-CAC-AGC-GCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 181030 0.67 0.88637
Target:  5'- cCAGUUaaGguGGUaGUCGCGCucgccguuaccGCUGAUCa -3'
miRNA:   3'- cGUCGA--CguCCA-CAGCGCG-----------CGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.