miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 180660 0.68 0.835399
Target:  5'- aGCGGCUcCAGGcGUUG-GCGCgaGGCCu -3'
miRNA:   3'- -CGUCGAcGUCCaCAGCgCGCGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 180531 0.67 0.865673
Target:  5'- gGC-GCUGCAGGUGUUGUa-GUUGaaGCCu -3'
miRNA:   3'- -CGuCGACGUCCACAGCGcgCGAC--UGG- -5'
13993 5' -58 NC_003521.1 + 180219 0.75 0.471241
Target:  5'- gGC-GUUGguGGUGcCGCGCGUgugGGCCu -3'
miRNA:   3'- -CGuCGACguCCACaGCGCGCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 179486 0.68 0.80241
Target:  5'- gGCAGgUGCAGGUGaCGCGa-CUcGAUCu -3'
miRNA:   3'- -CGUCgACGUCCACaGCGCgcGA-CUGG- -5'
13993 5' -58 NC_003521.1 + 177755 0.73 0.555237
Target:  5'- cGCAGCUGUAcGGgGUCGCGgucguCGCcagGGCCg -3'
miRNA:   3'- -CGUCGACGU-CCaCAGCGC-----GCGa--CUGG- -5'
13993 5' -58 NC_003521.1 + 176283 0.68 0.843238
Target:  5'- aGCAGCaGCAgacgggcgucGGcGUCGuCGCGCaacaUGGCCu -3'
miRNA:   3'- -CGUCGaCGU----------CCaCAGC-GCGCG----ACUGG- -5'
13993 5' -58 NC_003521.1 + 175404 0.67 0.865673
Target:  5'- cCGGC-GCAGGUGggucagggaggCGCGCGuCUGAgUg -3'
miRNA:   3'- cGUCGaCGUCCACa----------GCGCGC-GACUgG- -5'
13993 5' -58 NC_003521.1 + 174678 0.69 0.767155
Target:  5'- cGCGcGCUGCGGGUG-CGaggggucccCGCUGAUCu -3'
miRNA:   3'- -CGU-CGACGUCCACaGCgc-------GCGACUGG- -5'
13993 5' -58 NC_003521.1 + 174434 0.67 0.883715
Target:  5'- uGCAGCguuucacgcacgcGCuGGUGUCGC-UGCUcGCCg -3'
miRNA:   3'- -CGUCGa------------CGuCCACAGCGcGCGAcUGG- -5'
13993 5' -58 NC_003521.1 + 170923 0.7 0.739527
Target:  5'- cCAGCUaCGaucguGGUGUUGCGUuugguGCUGACCa -3'
miRNA:   3'- cGUCGAcGU-----CCACAGCGCG-----CGACUGG- -5'
13993 5' -58 NC_003521.1 + 170170 0.7 0.726354
Target:  5'- aGCAGCUGCAGcaccagccgcagcGUG-CGUGUGUccuucaucucuucgUGACCg -3'
miRNA:   3'- -CGUCGACGUC-------------CACaGCGCGCG--------------ACUGG- -5'
13993 5' -58 NC_003521.1 + 169457 0.73 0.536108
Target:  5'- gGCGGCgGCGGGUucGUCGCcagGCGCgucgucguUGGCCa -3'
miRNA:   3'- -CGUCGaCGUCCA--CAGCG---CGCG--------ACUGG- -5'
13993 5' -58 NC_003521.1 + 168565 0.77 0.362644
Target:  5'- -gGGCUGCGGGUaagGUgGCG-GCUGACCc -3'
miRNA:   3'- cgUCGACGUCCA---CAgCGCgCGACUGG- -5'
13993 5' -58 NC_003521.1 + 168087 0.68 0.819217
Target:  5'- -gGGCUGCAGaG-GUCG-GCGaaGACCg -3'
miRNA:   3'- cgUCGACGUC-CaCAGCgCGCgaCUGG- -5'
13993 5' -58 NC_003521.1 + 168018 0.68 0.835399
Target:  5'- uGCuGCUGguGGUGguaggCGUGCgggucuuggaGCUGugCc -3'
miRNA:   3'- -CGuCGACguCCACa----GCGCG----------CGACugG- -5'
13993 5' -58 NC_003521.1 + 167908 0.67 0.88637
Target:  5'- -gAGCgGCAGGUGggGCGcCGC-GAUCg -3'
miRNA:   3'- cgUCGaCGUCCACagCGC-GCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 167426 0.66 0.914467
Target:  5'- gGCGGCgcaGCAGGUGgaugaacUCggacaugacgaugaGCGUGCUGaggGCCg -3'
miRNA:   3'- -CGUCGa--CGUCCAC-------AG--------------CGCGCGAC---UGG- -5'
13993 5' -58 NC_003521.1 + 167095 0.68 0.835399
Target:  5'- aGCAGCUGCAcgaagcGGUcgcggcccggGUCGCuGCGCU--CCa -3'
miRNA:   3'- -CGUCGACGU------CCA----------CAGCG-CGCGAcuGG- -5'
13993 5' -58 NC_003521.1 + 166675 0.7 0.75253
Target:  5'- -gAGCUGCGacagcaucccgucucGGUG-CGUaGCGUUGACCa -3'
miRNA:   3'- cgUCGACGU---------------CCACaGCG-CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 165119 0.68 0.843238
Target:  5'- gGCGGCUGU-GGUGcggaCGgGgGCUGgACCg -3'
miRNA:   3'- -CGUCGACGuCCACa---GCgCgCGAC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.