miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 187615 0.66 0.916695
Target:  5'- aCGGcCUGCcGGgcgagccgGgccgCGCGcCGCUGGCCa -3'
miRNA:   3'- cGUC-GACGuCCa-------Ca---GCGC-GCGACUGG- -5'
13993 5' -58 NC_003521.1 + 31085 0.66 0.916695
Target:  5'- cCGGCUGCcguGGcUGcCGCuGCGCacGACCu -3'
miRNA:   3'- cGUCGACGu--CC-ACaGCG-CGCGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 162335 0.66 0.916141
Target:  5'- uCGGCccGUccgAGGUaagucacGUCGCGCGCcgGGCCg -3'
miRNA:   3'- cGUCGa-CG---UCCA-------CAGCGCGCGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 167426 0.66 0.914467
Target:  5'- gGCGGCgcaGCAGGUGgaugaacUCggacaugacgaugaGCGUGCUGaggGCCg -3'
miRNA:   3'- -CGUCGa--CGUCCAC-------AG--------------CGCGCGAC---UGG- -5'
13993 5' -58 NC_003521.1 + 121123 0.66 0.91334
Target:  5'- -aGGCUGguGGacgccguggagcugcUGUCGUGCuCgGACCg -3'
miRNA:   3'- cgUCGACguCC---------------ACAGCGCGcGaCUGG- -5'
13993 5' -58 NC_003521.1 + 27024 0.66 0.912774
Target:  5'- uGUGGCUGCGccguuucGGcGUCcacaugcgcgucuaCGCGCUGGCCa -3'
miRNA:   3'- -CGUCGACGU-------CCaCAGc-------------GCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 153992 0.66 0.911634
Target:  5'- aGCAGCUGCuugcgcagcacgcacGG-GUCGCGCaGCaccugGugCa -3'
miRNA:   3'- -CGUCGACGu--------------CCaCAGCGCG-CGa----CugG- -5'
13993 5' -58 NC_003521.1 + 120468 0.66 0.91106
Target:  5'- aCAGCgacguccGCAGGUGUCuccgccgagagGCGCGUguggggGACg -3'
miRNA:   3'- cGUCGa------CGUCCACAG-----------CGCGCGa-----CUGg -5'
13993 5' -58 NC_003521.1 + 76413 0.66 0.91106
Target:  5'- cCAGCgGC-GGUGUgGUGgUGCUGGCg -3'
miRNA:   3'- cGUCGaCGuCCACAgCGC-GCGACUGg -5'
13993 5' -58 NC_003521.1 + 207553 0.66 0.91106
Target:  5'- cGCAGCUGCugcacgaUCGCGCcggccuGCUGGCg -3'
miRNA:   3'- -CGUCGACGuccac--AGCGCG------CGACUGg -5'
13993 5' -58 NC_003521.1 + 116760 0.66 0.91106
Target:  5'- cGUGGCuugUGCAGcGUGggccgccgcCGCGgcaCGCUGGCCg -3'
miRNA:   3'- -CGUCG---ACGUC-CACa--------GCGC---GCGACUGG- -5'
13993 5' -58 NC_003521.1 + 32011 0.66 0.91106
Target:  5'- aCAGCUGCcgcagguaauuGGUG-CGCGUGCcgaagGACUu -3'
miRNA:   3'- cGUCGACGu----------CCACaGCGCGCGa----CUGG- -5'
13993 5' -58 NC_003521.1 + 121782 0.66 0.91106
Target:  5'- uCGGCcacggGCAGGUGgCGguacuUGCGCUcGGCCg -3'
miRNA:   3'- cGUCGa----CGUCCACaGC-----GCGCGA-CUGG- -5'
13993 5' -58 NC_003521.1 + 138047 0.66 0.91106
Target:  5'- cGgGGCUGUGGGUcgcccgcgaccGcCGCggacagcugagGCGCUGGCCc -3'
miRNA:   3'- -CgUCGACGUCCA-----------CaGCG-----------CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 222230 0.66 0.91106
Target:  5'- cGCGGCUgggccGCAGGaaccaGUCgaGCGCGCUcuCCa -3'
miRNA:   3'- -CGUCGA-----CGUCCa----CAG--CGCGCGAcuGG- -5'
13993 5' -58 NC_003521.1 + 100716 0.66 0.91106
Target:  5'- gGCGGC-GCu-GUGUCGCaaGCGCU-ACCa -3'
miRNA:   3'- -CGUCGaCGucCACAGCG--CGCGAcUGG- -5'
13993 5' -58 NC_003521.1 + 164451 0.66 0.905209
Target:  5'- cGCGGCcGCGGccgucacgGUCGC-CGCUGccGCCg -3'
miRNA:   3'- -CGUCGaCGUCca------CAGCGcGCGAC--UGG- -5'
13993 5' -58 NC_003521.1 + 78000 0.66 0.905209
Target:  5'- ---cUUGUAGGacagGUCGUccuuGCGCUGACCc -3'
miRNA:   3'- cgucGACGUCCa---CAGCG----CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 63143 0.66 0.905209
Target:  5'- -gAGCaGCAGcUG-CGCGgGCUGACg -3'
miRNA:   3'- cgUCGaCGUCcACaGCGCgCGACUGg -5'
13993 5' -58 NC_003521.1 + 80365 0.66 0.905209
Target:  5'- aGCGGCUGCA--UGUacaUGCGaCGUUGGCg -3'
miRNA:   3'- -CGUCGACGUccACA---GCGC-GCGACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.