miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13994 3' -57.1 NC_003521.1 + 36778 0.66 0.948667
Target:  5'- -cGUGGCCugGcgGGCGUGGAgGACG-Cg -3'
miRNA:   3'- ucCGCCGG--CuaCUGCACCUaCUGCuG- -5'
13994 3' -57.1 NC_003521.1 + 80527 0.66 0.948667
Target:  5'- gAGGCGGCagCGAcGACGaguacGAcGACGACg -3'
miRNA:   3'- -UCCGCCG--GCUaCUGCac---CUaCUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 91643 0.66 0.948667
Target:  5'- uGGCcGCCGGUGGCGacgcgcgccGAgacgGACGACg -3'
miRNA:   3'- uCCGcCGGCUACUGCac-------CUa---CUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 18722 0.66 0.948667
Target:  5'- uGGCuGCCGcUGGCGgcGGcgaucGUGGCGGCg -3'
miRNA:   3'- uCCGcCGGCuACUGCa-CC-----UACUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 157290 0.66 0.948667
Target:  5'- cGGCGGCCGcguACGgggGGA-GGCGGg -3'
miRNA:   3'- uCCGCCGGCuacUGCa--CCUaCUGCUg -5'
13994 3' -57.1 NC_003521.1 + 223732 0.66 0.948667
Target:  5'- cGGCGGguCCGGUGGCG-GGAacGugGGu -3'
miRNA:   3'- uCCGCC--GGCUACUGCaCCUa-CugCUg -5'
13994 3' -57.1 NC_003521.1 + 167684 0.66 0.948259
Target:  5'- -cGCGGUugCGGUGACGacgcucgUGGAggaGGCGGCg -3'
miRNA:   3'- ucCGCCG--GCUACUGC-------ACCUa--CUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 76324 0.66 0.944486
Target:  5'- uGGCGGCgacagcugCGGaGGCGacGGUGACGGCu -3'
miRNA:   3'- uCCGCCG--------GCUaCUGCacCUACUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 108038 0.66 0.944486
Target:  5'- cAGGCGGC----GGCG-GGAUGacGCGACg -3'
miRNA:   3'- -UCCGCCGgcuaCUGCaCCUAC--UGCUG- -5'
13994 3' -57.1 NC_003521.1 + 102351 0.66 0.944486
Target:  5'- cGGGCGGCaGGUGGCagauGUGGcgccgccGGCGAUg -3'
miRNA:   3'- -UCCGCCGgCUACUG----CACCua-----CUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 163440 0.66 0.944486
Target:  5'- gAGGauGauGA-GACGUGGAUGAUGAg -3'
miRNA:   3'- -UCCgcCggCUaCUGCACCUACUGCUg -5'
13994 3' -57.1 NC_003521.1 + 186625 0.66 0.944486
Target:  5'- -cGCGGCgGcgGugGUGGcgGcaaguCGACg -3'
miRNA:   3'- ucCGCCGgCuaCugCACCuaCu----GCUG- -5'
13994 3' -57.1 NC_003521.1 + 136696 0.66 0.944486
Target:  5'- aGGGCGGgcCCGAgcagGACGccgccgaGGAUGGCaGCg -3'
miRNA:   3'- -UCCGCC--GGCUa---CUGCa------CCUACUGcUG- -5'
13994 3' -57.1 NC_003521.1 + 98325 0.66 0.944486
Target:  5'- cGGCGGCCacgacGGUGguuGCGcUGGcagaGACGACg -3'
miRNA:   3'- uCCGCCGG-----CUAC---UGC-ACCua--CUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 216093 0.66 0.944486
Target:  5'- gGGGUGuGCCGuuaaauACcugGGGUGACGACa -3'
miRNA:   3'- -UCCGC-CGGCuac---UGca-CCUACUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 33552 0.66 0.944486
Target:  5'- aAGGCGGCCGGccUGACGcaGGc--ACGAg -3'
miRNA:   3'- -UCCGCCGGCU--ACUGCa-CCuacUGCUg -5'
13994 3' -57.1 NC_003521.1 + 116463 0.66 0.940088
Target:  5'- -cGCGGCC---GugGUGGGacacgUGGCGGCg -3'
miRNA:   3'- ucCGCCGGcuaCugCACCU-----ACUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 128423 0.66 0.940088
Target:  5'- aAGGCGGCCGGUcGGCGcacUGcGccagccagGugGACg -3'
miRNA:   3'- -UCCGCCGGCUA-CUGC---AC-Cua------CugCUG- -5'
13994 3' -57.1 NC_003521.1 + 196939 0.66 0.940088
Target:  5'- cGGCaGCacCGGUaGCGUGGgcGACGGCc -3'
miRNA:   3'- uCCGcCG--GCUAcUGCACCuaCUGCUG- -5'
13994 3' -57.1 NC_003521.1 + 105668 0.66 0.940088
Target:  5'- uGGGCGGCaCGAUcaguugcccGAUG-GGGUGGCuGCc -3'
miRNA:   3'- -UCCGCCG-GCUA---------CUGCaCCUACUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.