miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13994 5' -56.5 NC_003521.1 + 223466 0.66 0.97052
Target:  5'- uGGGcCGCCGcgCCGgCGUcaCGGCccgGGAGGu -3'
miRNA:   3'- -CCCaGCGGCaaGGU-GCA--GCCG---CUUCU- -5'
13994 5' -56.5 NC_003521.1 + 168978 0.66 0.97052
Target:  5'- -uGUCGCCGacgCGCGUCGGUcgcgGGAGGc -3'
miRNA:   3'- ccCAGCGGCaagGUGCAGCCG----CUUCU- -5'
13994 5' -56.5 NC_003521.1 + 70089 0.66 0.97052
Target:  5'- cGGGUUGCCGcagggcaCCugGcCGGCGu--- -3'
miRNA:   3'- -CCCAGCGGCaa-----GGugCaGCCGCuucu -5'
13994 5' -56.5 NC_003521.1 + 18980 0.66 0.97052
Target:  5'- gGGGUCGaggaCGcgCCGCG-CGaCGAGGGa -3'
miRNA:   3'- -CCCAGCg---GCaaGGUGCaGCcGCUUCU- -5'
13994 5' -56.5 NC_003521.1 + 84598 0.66 0.97052
Target:  5'- uGGUCGaCCaGcUCgGCGUCGGUGAcGGc -3'
miRNA:   3'- cCCAGC-GG-CaAGgUGCAGCCGCUuCU- -5'
13994 5' -56.5 NC_003521.1 + 53216 0.66 0.968838
Target:  5'- --cUCGCCGgggagUCCGCGggcgaagcgaccgcCGGCGAAGc -3'
miRNA:   3'- cccAGCGGCa----AGGUGCa-------------GCCGCUUCu -5'
13994 5' -56.5 NC_003521.1 + 221403 0.66 0.96768
Target:  5'- cGGUCcuGCCGgcugcagUUguUGUCGGCGAGGc -3'
miRNA:   3'- cCCAG--CGGCa------AGguGCAGCCGCUUCu -5'
13994 5' -56.5 NC_003521.1 + 130911 0.66 0.96768
Target:  5'- -cGUCGUCGggUCacgGCGUCGGCGGucGAg -3'
miRNA:   3'- ccCAGCGGCa-AGg--UGCAGCCGCUu-CU- -5'
13994 5' -56.5 NC_003521.1 + 5671 0.66 0.96768
Target:  5'- gGGGUCGagacaCGggcgCC-CGUCcGCGggGAa -3'
miRNA:   3'- -CCCAGCg----GCaa--GGuGCAGcCGCuuCU- -5'
13994 5' -56.5 NC_003521.1 + 35376 0.66 0.96768
Target:  5'- ---aCGCCGagUCCcCcUCGGCGAGGAc -3'
miRNA:   3'- cccaGCGGCa-AGGuGcAGCCGCUUCU- -5'
13994 5' -56.5 NC_003521.1 + 100337 0.66 0.96768
Target:  5'- cGGG-CGCC-UUCCucaacCG-CGGCGAAGc -3'
miRNA:   3'- -CCCaGCGGcAAGGu----GCaGCCGCUUCu -5'
13994 5' -56.5 NC_003521.1 + 212794 0.66 0.96768
Target:  5'- uGGGUC-CCGcUCCcCG-CGGCGugcuGGAg -3'
miRNA:   3'- -CCCAGcGGCaAGGuGCaGCCGCu---UCU- -5'
13994 5' -56.5 NC_003521.1 + 178780 0.66 0.96768
Target:  5'- uGGUUGCgGcgUCCGCGggacgGGCGAGGc -3'
miRNA:   3'- cCCAGCGgCa-AGGUGCag---CCGCUUCu -5'
13994 5' -56.5 NC_003521.1 + 228990 0.66 0.966791
Target:  5'- aGGUCccgauaccaGCCGUggauggUCUguggcacauggaagACGUUGGCGAAGAa -3'
miRNA:   3'- cCCAG---------CGGCA------AGG--------------UGCAGCCGCUUCU- -5'
13994 5' -56.5 NC_003521.1 + 88459 0.66 0.964651
Target:  5'- aGGGcgCGCCGccccggCCggccccagagcaGCGUCGGCGcGGGc -3'
miRNA:   3'- -CCCa-GCGGCaa----GG------------UGCAGCCGCuUCU- -5'
13994 5' -56.5 NC_003521.1 + 171663 0.66 0.964651
Target:  5'- cGGG-CGUCGgga-GCGUCGGCGGc-- -3'
miRNA:   3'- -CCCaGCGGCaaggUGCAGCCGCUucu -5'
13994 5' -56.5 NC_003521.1 + 177600 0.66 0.963386
Target:  5'- cGGUUccgGCCGUUCCGCugccggaauccgCGGaCGGAGAa -3'
miRNA:   3'- cCCAG---CGGCAAGGUGca----------GCC-GCUUCU- -5'
13994 5' -56.5 NC_003521.1 + 181160 0.66 0.961429
Target:  5'- uGGGUCuCCGUcUCCAgauaGagGGCGAAGc -3'
miRNA:   3'- -CCCAGcGGCA-AGGUg---CagCCGCUUCu -5'
13994 5' -56.5 NC_003521.1 + 171280 0.66 0.961429
Target:  5'- uGGccugCGCUGUaUCCGCGUgGGCugGAAGGc -3'
miRNA:   3'- cCCa---GCGGCA-AGGUGCAgCCG--CUUCU- -5'
13994 5' -56.5 NC_003521.1 + 88073 0.66 0.961096
Target:  5'- uGGUCGgcggcgcCCGUgaCCACGggccacUCGGCGAAGu -3'
miRNA:   3'- cCCAGC-------GGCAa-GGUGC------AGCCGCUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.