Results 61 - 80 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 102797 | 0.67 | 0.970195 |
Target: 5'- cCCGUGcGCCGgcagcgacgcacgcGCACCucgacgCCGAGAucGACCu -3' miRNA: 3'- -GGCACaCGGU--------------CGUGG------GGUUCUu-CUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 74698 | 0.67 | 0.968168 |
Target: 5'- gCCGaccUGCCGGcCGCCCUgAAGcAGGCCc -3' miRNA: 3'- -GGCac-ACGGUC-GUGGGG-UUCuUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 126308 | 0.67 | 0.96542 |
Target: 5'- cCCGUGgcggcggugggcacgGCggccacgacggaCAGCACCCagauGAAGGCCa -3' miRNA: 3'- -GGCACa--------------CG------------GUCGUGGGguu-CUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 194282 | 0.67 | 0.968168 |
Target: 5'- cCCGgcgcgagGCCcugguGCGCCUgGAGAAGACg -3' miRNA: 3'- -GGCaca----CGGu----CGUGGGgUUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 90547 | 0.67 | 0.968168 |
Target: 5'- cCCGcGa--CAGCACCCaCGAGAGG-CCg -3' miRNA: 3'- -GGCaCacgGUCGUGGG-GUUCUUCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 160730 | 0.67 | 0.968168 |
Target: 5'- aUCGUGgucgcgccGUCGGCACCCCcgauGAGcaGAGACa -3' miRNA: 3'- -GGCACa-------CGGUCGUGGGG----UUC--UUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 159957 | 0.67 | 0.961841 |
Target: 5'- aCCGaggaGUGCCAGCuacccaGCCUCAAGAucuucaucGCCg -3' miRNA: 3'- -GGCa---CACGGUCG------UGGGGUUCUuc------UGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 204938 | 0.67 | 0.962842 |
Target: 5'- gCCGUGgcaccgGCCAGCgcgagacgaaaaaagACagaagcaCCCGAGAGcGACCu -3' miRNA: 3'- -GGCACa-----CGGUCG---------------UG-------GGGUUCUU-CUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 137919 | 0.67 | 0.953546 |
Target: 5'- cCCGUG-GCUGGcgggucgcgguuccCugCCCGAGGAGcCCg -3' miRNA: 3'- -GGCACaCGGUC--------------GugGGGUUCUUCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 206545 | 0.67 | 0.961842 |
Target: 5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3' miRNA: 3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 80144 | 0.67 | 0.961842 |
Target: 5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3' miRNA: 3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 148980 | 0.67 | 0.961842 |
Target: 5'- uCCGcGUGCUGGCGCgcaccuucacgCCCGuccAGAuccAGACCg -3' miRNA: 3'- -GGCaCACGGUCGUG-----------GGGU---UCU---UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 136589 | 0.67 | 0.961842 |
Target: 5'- cCUG-GUGCUcgaucacucGGCACUCUcgugcGAGGAGGCCg -3' miRNA: 3'- -GGCaCACGG---------UCGUGGGG-----UUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 111720 | 0.67 | 0.961842 |
Target: 5'- uCCGUGcGCCGGCACgCCAcccacaGCCu -3' miRNA: 3'- -GGCACaCGGUCGUGgGGUucuuc-UGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 59606 | 0.67 | 0.958372 |
Target: 5'- aCGguaGUGgCGGCgGCCCCGGcGgcGACCg -3' miRNA: 3'- gGCa--CACgGUCG-UGGGGUU-CuuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 200908 | 0.67 | 0.958372 |
Target: 5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3' miRNA: 3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 167801 | 0.67 | 0.958372 |
Target: 5'- uCCGUcaGCCAGCACCaCCGcgcaugucagccAGAgcaggagcggccAGGCCc -3' miRNA: 3'- -GGCAcaCGGUCGUGG-GGU------------UCU------------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 140592 | 0.67 | 0.958372 |
Target: 5'- uUCGcG-GCCGGCgagacgcuccGCUUCGAGGAGGCCg -3' miRNA: 3'- -GGCaCaCGGUCG----------UGGGGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 239832 | 0.67 | 0.954692 |
Target: 5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3' miRNA: 3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 226694 | 0.67 | 0.954692 |
Target: 5'- aCGUcacGUGCCAGC-CCUUcGGcGGACCc -3' miRNA: 3'- gGCA---CACGGUCGuGGGGuUCuUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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