Results 101 - 120 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 188490 | 0.68 | 0.932532 |
Target: 5'- gCCGUGgGCCugGGUccGCCgCCGAGAuacgaggAGGCCg -3' miRNA: 3'- -GGCACaCGG--UCG--UGG-GGUUCU-------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 88673 | 0.68 | 0.933023 |
Target: 5'- uCgGUGgGCCGGCGgCCCGGcucGggGACa -3' miRNA: 3'- -GgCACaCGGUCGUgGGGUU---CuuCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 100722 | 0.68 | 0.932532 |
Target: 5'- gCUGUGUcgcaagcGCUAccagaugauGCACCCCGAGcuGGGCCu -3' miRNA: 3'- -GGCACA-------CGGU---------CGUGGGGUUCu-UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 40826 | 0.68 | 0.932532 |
Target: 5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3' miRNA: 3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 20289 | 0.68 | 0.946686 |
Target: 5'- gCgGUGgaucucGCCGGCGCCaugcagcaCCAGGAGG-CCa -3' miRNA: 3'- -GgCACa-----CGGUCGUGG--------GGUUCUUCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 33476 | 0.68 | 0.950798 |
Target: 5'- gCCGgccGcGCCGacccgagggacGCGCCCCccGAAGACCu -3' miRNA: 3'- -GGCa--CaCGGU-----------CGUGGGGuuCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 117400 | 0.68 | 0.950798 |
Target: 5'- gCGcUGUGCUGGCACCggguGGAGGGCg -3' miRNA: 3'- gGC-ACACGGUCGUGGggu-UCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 44742 | 0.68 | 0.950798 |
Target: 5'- uUCGUGcUGCUGG-ACgCCGAGAcGGACCg -3' miRNA: 3'- -GGCAC-ACGGUCgUGgGGUUCU-UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 130882 | 0.68 | 0.941012 |
Target: 5'- aCCGUGUGCCuGCGgcgacagaucgaccCCCCGuc-AGGCa -3' miRNA: 3'- -GGCACACGGuCGU--------------GGGGUucuUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 211739 | 0.68 | 0.941909 |
Target: 5'- -aGUGcGCCAccaugagcucgauGC-CCaCCAGGAAGGCCa -3' miRNA: 3'- ggCACaCGGU-------------CGuGG-GGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 127684 | 0.68 | 0.950798 |
Target: 5'- uCCGUGuUGCCGuGCACCagcacguccaCCAgguAGAAGAgCu -3' miRNA: 3'- -GGCAC-ACGGU-CGUGG----------GGU---UCUUCUgG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 504 | 0.68 | 0.932533 |
Target: 5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3' miRNA: 3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 57614 | 0.68 | 0.950798 |
Target: 5'- ---cGUGCCGucGCGCUCCAGGcacgucacgGGGGCCg -3' miRNA: 3'- ggcaCACGGU--CGUGGGGUUC---------UUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 13941 | 0.68 | 0.942354 |
Target: 5'- gCCGUGgUGCCcccgcAGCugCCCucgcuGGAgcccugauGGGCCu -3' miRNA: 3'- -GGCAC-ACGG-----UCGugGGGu----UCU--------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 118947 | 0.68 | 0.933023 |
Target: 5'- cCCGUcaggGCCAGCG-CCCGAGAcAGuCCc -3' miRNA: 3'- -GGCAca--CGGUCGUgGGGUUCU-UCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 117285 | 0.68 | 0.936391 |
Target: 5'- gCCGUGgUGCCGGCuccccucacgcuGCCCCAcgacGGAguuuauuuacccaaAGACg -3' miRNA: 3'- -GGCAC-ACGGUCG------------UGGGGU----UCU--------------UCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 35473 | 0.68 | 0.937801 |
Target: 5'- gUCGUGcacgGCgCAGCugccGCCgCCGAGGAGGCg -3' miRNA: 3'- -GGCACa---CG-GUCG----UGG-GGUUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 37479 | 0.68 | 0.946686 |
Target: 5'- aCCGUGgUGCCgcagGGCACCCCcauc--GCCa -3' miRNA: 3'- -GGCAC-ACGG----UCGUGGGGuucuucUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 55957 | 0.68 | 0.949587 |
Target: 5'- aCCGUGUGCa---GCCCCAccacgccgaugugcAGggG-CCg -3' miRNA: 3'- -GGCACACGgucgUGGGGU--------------UCuuCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 36213 | 0.68 | 0.950798 |
Target: 5'- aCGcUGUcGCCAcauGgACCCCGAGcAGGACUa -3' miRNA: 3'- gGC-ACA-CGGU---CgUGGGGUUC-UUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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