miRNA display CGI


Results 121 - 140 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 127684 0.68 0.950798
Target:  5'- uCCGUGuUGCCGuGCACCagcacguccaCCAgguAGAAGAgCu -3'
miRNA:   3'- -GGCAC-ACGGU-CGUGG----------GGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 186524 0.68 0.942355
Target:  5'- gCgGUGUcGCCAGCggggGCUCCGuGGGAGGCa -3'
miRNA:   3'- -GgCACA-CGGUCG----UGGGGU-UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 40826 0.68 0.932532
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 57614 0.68 0.950798
Target:  5'- ---cGUGCCGucGCGCUCCAGGcacgucacgGGGGCCg -3'
miRNA:   3'- ggcaCACGGU--CGUGGGGUUC---------UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 36213 0.68 0.950798
Target:  5'- aCGcUGUcGCCAcauGgACCCCGAGcAGGACUa -3'
miRNA:   3'- gGC-ACA-CGGU---CgUGGGGUUC-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 55957 0.68 0.949587
Target:  5'- aCCGUGUGCa---GCCCCAccacgccgaugugcAGggG-CCg -3'
miRNA:   3'- -GGCACACGgucgUGGGGU--------------UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 37479 0.68 0.946686
Target:  5'- aCCGUGgUGCCgcagGGCACCCCcauc--GCCa -3'
miRNA:   3'- -GGCAC-ACGG----UCGUGGGGuucuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 212024 0.68 0.942355
Target:  5'- gCCGUGUGCCaAGUGgCaUGAGAGGGCg -3'
miRNA:   3'- -GGCACACGG-UCGUgGgGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 188490 0.68 0.932532
Target:  5'- gCCGUGgGCCugGGUccGCCgCCGAGAuacgaggAGGCCg -3'
miRNA:   3'- -GGCACaCGG--UCG--UGG-GGUUCU-------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 172205 0.69 0.92802
Target:  5'- gCGUGga-CAGCGCCgaguCgAAGAAGGCCg -3'
miRNA:   3'- gGCACacgGUCGUGG----GgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 208875 0.69 0.92802
Target:  5'- aCCaUGUGCCuGUuccuggACCCCGAGGAGcGCg -3'
miRNA:   3'- -GGcACACGGuCG------UGGGGUUCUUC-UGg -5'
13995 5' -54.9 NC_003521.1 + 75241 0.69 0.90576
Target:  5'- ---cGUGCCcuucauGCACgCCgAGGAGGGCCg -3'
miRNA:   3'- ggcaCACGGu-----CGUG-GGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148434 0.69 0.90576
Target:  5'- gCCGc--GCCGGCgGCUCCAGGGGuGGCCg -3'
miRNA:   3'- -GGCacaCGGUCG-UGGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 104200 0.69 0.91108
Target:  5'- cCCGUG-GCCGauuacgugcugcuGCAgCCCAGcGAGGACg -3'
miRNA:   3'- -GGCACaCGGU-------------CGUgGGGUU-CUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 175964 0.69 0.91166
Target:  5'- cCCGUG-GCCGGgGguaCCCGAGAucGCCg -3'
miRNA:   3'- -GGCACaCGGUCgUg--GGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 11943 0.69 0.922792
Target:  5'- gCCGUGUuuuGUguGUAUCCCAAGucaGAGAgCCg -3'
miRNA:   3'- -GGCACA---CGguCGUGGGGUUC---UUCU-GG- -5'
13995 5' -54.9 NC_003521.1 + 218337 0.69 0.922792
Target:  5'- aCGgugGUGCCGGUguucAUCaCCAGGcAGGCCa -3'
miRNA:   3'- gGCa--CACGGUCG----UGG-GGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130504 0.69 0.927507
Target:  5'- gCCGcGUcaugaugGCCcugcGGCugCCCGAGcAGACCg -3'
miRNA:   3'- -GGCaCA-------CGG----UCGugGGGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 132289 0.69 0.92802
Target:  5'- aCCGUGUGCC---GCCaCGuGGAGGCCa -3'
miRNA:   3'- -GGCACACGGucgUGGgGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 73569 0.69 0.899638
Target:  5'- gCCGUGgUGCgGGCGCUggUCAugaacGAGGACCu -3'
miRNA:   3'- -GGCAC-ACGgUCGUGG--GGUu----CUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.