miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 236253 0.7 0.889389
Target:  5'- aCCGgagGCCGGCguguGCCCCGGccguagugacuccccGggGACCc -3'
miRNA:   3'- -GGCacaCGGUCG----UGGGGUU---------------CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 193151 0.7 0.872289
Target:  5'- gCCGUGUcgucggcGCaCAGCAUCUCAGGA--GCCg -3'
miRNA:   3'- -GGCACA-------CG-GUCGUGGGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 72797 0.7 0.893297
Target:  5'- aUGUGgGUCucgGGCGCCaCCAAGAaAGACCu -3'
miRNA:   3'- gGCACaCGG---UCGUGG-GGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 207585 0.7 0.893297
Target:  5'- gCGUGUGCCAGCucaacgccgGCUgCAAGAu--CCg -3'
miRNA:   3'- gGCACACGGUCG---------UGGgGUUCUucuGG- -5'
13995 5' -54.9 NC_003521.1 + 114705 0.7 0.872998
Target:  5'- aCGUGUaCCGGCACgaCGAGAucGACCg -3'
miRNA:   3'- gGCACAcGGUCGUGggGUUCUu-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 38259 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 148198 0.7 0.865819
Target:  5'- uCCGUGUcaugacGUCAGCGaUCCGGcGAGGACCg -3'
miRNA:   3'- -GGCACA------CGGUCGUgGGGUU-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 198830 0.7 0.872998
Target:  5'- gCCGUGuUGCUgcuGCgACCUUAAGAAGGCg -3'
miRNA:   3'- -GGCAC-ACGGu--CG-UGGGGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 134611 0.7 0.865819
Target:  5'- aUGUGcGCCGcGCACUCgGAGAuGGCCa -3'
miRNA:   3'- gGCACaCGGU-CGUGGGgUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 218337 0.69 0.922792
Target:  5'- aCGgugGUGCCGGUguucAUCaCCAGGcAGGCCa -3'
miRNA:   3'- gGCa--CACGGUCG----UGG-GGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 73569 0.69 0.899638
Target:  5'- gCCGUGgUGCgGGCGCUggUCAugaacGAGGACCu -3'
miRNA:   3'- -GGCAC-ACGgUCGUGG--GGUu----CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130504 0.69 0.927507
Target:  5'- gCCGcGUcaugaugGCCcugcGGCugCCCGAGcAGACCg -3'
miRNA:   3'- -GGCaCA-------CGG----UCGugGGGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 132289 0.69 0.92802
Target:  5'- aCCGUGUGCC---GCCaCGuGGAGGCCa -3'
miRNA:   3'- -GGCACACGGucgUGGgGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 99823 0.69 0.899638
Target:  5'- aCGUGcuggGCCuuGUugCUgGAGAGGGCCa -3'
miRNA:   3'- gGCACa---CGGu-CGugGGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 206258 0.69 0.90576
Target:  5'- gCGUcaGCCugguGCACCCCGAccacAAGGCCg -3'
miRNA:   3'- gGCAcaCGGu---CGUGGGGUUc---UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 175964 0.69 0.91166
Target:  5'- cCCGUG-GCCGGgGguaCCCGAGAucGCCg -3'
miRNA:   3'- -GGCACaCGGUCgUg--GGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 104200 0.69 0.91108
Target:  5'- cCCGUG-GCCGauuacgugcugcuGCAgCCCAGcGAGGACg -3'
miRNA:   3'- -GGCACaCGGU-------------CGUgGGGUU-CUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 148434 0.69 0.90576
Target:  5'- gCCGc--GCCGGCgGCUCCAGGGGuGGCCg -3'
miRNA:   3'- -GGCacaCGGUCG-UGGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 75241 0.69 0.90576
Target:  5'- ---cGUGCCcuucauGCACgCCgAGGAGGGCCg -3'
miRNA:   3'- ggcaCACGGu-----CGUG-GGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 11943 0.69 0.922792
Target:  5'- gCCGUGUuuuGUguGUAUCCCAAGucaGAGAgCCg -3'
miRNA:   3'- -GGCACA---CGguCGUGGGGUUC---UUCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.