miRNA display CGI


Results 61 - 80 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 87740 0.69 0.91108
Target:  5'- gCGUGguggGCCccGGCccggGCCCCGgcggcggAGGAGGCCu -3'
miRNA:   3'- gGCACa---CGG--UCG----UGGGGU-------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 7199 0.69 0.922792
Target:  5'- gCCGcUGaaauUGCCcucgAGCACCCCGccGGAGAUCa -3'
miRNA:   3'- -GGC-AC----ACGG----UCGUGGGGUu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 172205 0.69 0.92802
Target:  5'- gCGUGga-CAGCGCCgaguCgAAGAAGGCCg -3'
miRNA:   3'- gGCACacgGUCGUGG----GgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148434 0.69 0.90576
Target:  5'- gCCGc--GCCGGCgGCUCCAGGGGuGGCCg -3'
miRNA:   3'- -GGCacaCGGUCG-UGGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 208875 0.69 0.92802
Target:  5'- aCCaUGUGCCuGUuccuggACCCCGAGGAGcGCg -3'
miRNA:   3'- -GGcACACGGuCG------UGGGGUUCUUC-UGg -5'
13995 5' -54.9 NC_003521.1 + 148762 0.69 0.917338
Target:  5'- cCCG-GUccGCCaucgcuacgggaGGCACCCCGGGGacccccGGACCc -3'
miRNA:   3'- -GGCaCA--CGG------------UCGUGGGGUUCU------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 206258 0.69 0.90576
Target:  5'- gCGUcaGCCugguGCACCCCGAccacAAGGCCg -3'
miRNA:   3'- gGCAcaCGGu---CGUGGGGUUc---UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 164572 0.69 0.90576
Target:  5'- gCCGUGcGCCucucGCGCCUCAcgcucGAGGACg -3'
miRNA:   3'- -GGCACaCGGu---CGUGGGGUu----CUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 99823 0.69 0.899638
Target:  5'- aCGUGcuggGCCuuGUugCUgGAGAGGGCCa -3'
miRNA:   3'- gGCACa---CGGu-CGugGGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 35473 0.68 0.937801
Target:  5'- gUCGUGcacgGCgCAGCugccGCCgCCGAGGAGGCg -3'
miRNA:   3'- -GGCACa---CG-GUCG----UGG-GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 37479 0.68 0.946686
Target:  5'- aCCGUGgUGCCgcagGGCACCCCcauc--GCCa -3'
miRNA:   3'- -GGCAC-ACGG----UCGUGGGGuucuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 55957 0.68 0.949587
Target:  5'- aCCGUGUGCa---GCCCCAccacgccgaugugcAGggG-CCg -3'
miRNA:   3'- -GGCACACGgucgUGGGGU--------------UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 36213 0.68 0.950798
Target:  5'- aCGcUGUcGCCAcauGgACCCCGAGcAGGACUa -3'
miRNA:   3'- gGC-ACA-CGGU---CgUGGGGUUC-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 504 0.68 0.932533
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 57614 0.68 0.950798
Target:  5'- ---cGUGCCGucGCGCUCCAGGcacgucacgGGGGCCg -3'
miRNA:   3'- ggcaCACGGU--CGUGGGGUUC---------UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 102472 0.68 0.937801
Target:  5'- aCCGUGUGCuUAGagaGgCCCGAGAc-GCCg -3'
miRNA:   3'- -GGCACACG-GUCg--UgGGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 117285 0.68 0.936391
Target:  5'- gCCGUGgUGCCGGCuccccucacgcuGCCCCAcgacGGAguuuauuuacccaaAGACg -3'
miRNA:   3'- -GGCAC-ACGGUCG------------UGGGGU----UCU--------------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 118947 0.68 0.933023
Target:  5'- cCCGUcaggGCCAGCG-CCCGAGAcAGuCCc -3'
miRNA:   3'- -GGCAca--CGGUCGUgGGGUUCU-UCuGG- -5'
13995 5' -54.9 NC_003521.1 + 88673 0.68 0.933023
Target:  5'- uCgGUGgGCCGGCGgCCCGGcucGggGACa -3'
miRNA:   3'- -GgCACaCGGUCGUgGGGUU---CuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 127684 0.68 0.950798
Target:  5'- uCCGUGuUGCCGuGCACCagcacguccaCCAgguAGAAGAgCu -3'
miRNA:   3'- -GGCAC-ACGGU-CGUGG----------GGU---UCUUCUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.