miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 40826 0.68 0.932532
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 209245 0.68 0.937801
Target:  5'- cCCGUauccGUGCCAGCGugUCCCGcGAccuGGGCUu -3'
miRNA:   3'- -GGCA----CACGGUCGU--GGGGUuCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 117285 0.68 0.936391
Target:  5'- gCCGUGgUGCCGGCuccccucacgcuGCCCCAcgacGGAguuuauuuacccaaAGACg -3'
miRNA:   3'- -GGCAC-ACGGUCG------------UGGGGU----UCU--------------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 35473 0.68 0.937801
Target:  5'- gUCGUGcacgGCgCAGCugccGCCgCCGAGGAGGCg -3'
miRNA:   3'- -GGCACa---CG-GUCG----UGG-GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 127684 0.68 0.950798
Target:  5'- uCCGUGuUGCCGuGCACCagcacguccaCCAgguAGAAGAgCu -3'
miRNA:   3'- -GGCAC-ACGGU-CGUGG----------GGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 57614 0.68 0.950798
Target:  5'- ---cGUGCCGucGCGCUCCAGGcacgucacgGGGGCCg -3'
miRNA:   3'- ggcaCACGGU--CGUGGGGUUC---------UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 36213 0.68 0.950798
Target:  5'- aCGcUGUcGCCAcauGgACCCCGAGcAGGACUa -3'
miRNA:   3'- gGC-ACA-CGGU---CgUGGGGUUC-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 55957 0.68 0.949587
Target:  5'- aCCGUGUGCa---GCCCCAccacgccgaugugcAGggG-CCg -3'
miRNA:   3'- -GGCACACGgucgUGGGGU--------------UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 198987 0.68 0.952381
Target:  5'- aCCGUcaGCCucagcgucugauguuGGCACUCCA--GAGACCa -3'
miRNA:   3'- -GGCAcaCGG---------------UCGUGGGGUucUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152957 0.68 0.950798
Target:  5'- aCGgccugGCCAGCGCCUgCGAGGAcACCu -3'
miRNA:   3'- gGCaca--CGGUCGUGGG-GUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 44742 0.68 0.950798
Target:  5'- uUCGUGcUGCUGG-ACgCCGAGAcGGACCg -3'
miRNA:   3'- -GGCAC-ACGGUCgUGgGGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 37479 0.68 0.946686
Target:  5'- aCCGUGgUGCCgcagGGCACCCCcauc--GCCa -3'
miRNA:   3'- -GGCAC-ACGG----UCGUGGGGuucuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 102472 0.68 0.937801
Target:  5'- aCCGUGUGCuUAGagaGgCCCGAGAc-GCCg -3'
miRNA:   3'- -GGCACACG-GUCg--UgGGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 215144 0.68 0.937801
Target:  5'- aCGaagGCCAGCGUCaCCAGGAcguGGACCa -3'
miRNA:   3'- gGCacaCGGUCGUGG-GGUUCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 214651 0.68 0.941909
Target:  5'- aCCGUGaugGCCgucuccagcagcAGCAgUCCGuagacgcGGAAGACCa -3'
miRNA:   3'- -GGCACa--CGG------------UCGUgGGGU-------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 186524 0.68 0.942355
Target:  5'- gCgGUGUcGCCAGCggggGCUCCGuGGGAGGCa -3'
miRNA:   3'- -GgCACA-CGGUCG----UGGGGU-UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 212024 0.68 0.942355
Target:  5'- gCCGUGUGCCaAGUGgCaUGAGAGGGCg -3'
miRNA:   3'- -GGCACACGG-UCGUgGgGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 504 0.68 0.932533
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 213413 0.67 0.968168
Target:  5'- aCGcUG-GUCAGCACCCgCGAGcAGAUg -3'
miRNA:   3'- gGC-ACaCGGUCGUGGG-GUUCuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 50291 0.67 0.968168
Target:  5'- gCCGcUGcUGCCGccGCACCucgcuccucagCCAGGGAGGCa -3'
miRNA:   3'- -GGC-AC-ACGGU--CGUGG-----------GGUUCUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.