miRNA display CGI


Results 121 - 140 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 88336 0.67 0.968168
Target:  5'- gCCGaa-GCgCAGCgacugACCCCAGGAGGugUa -3'
miRNA:   3'- -GGCacaCG-GUCG-----UGGGGUUCUUCugG- -5'
13995 5' -54.9 NC_003521.1 + 85768 0.67 0.968168
Target:  5'- -gGUG-GCCAGCGCCUCGcAGccGuCCa -3'
miRNA:   3'- ggCACaCGGUCGUGGGGU-UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 73964 0.67 0.968168
Target:  5'- aCCGUGUGCCuGCugUgCGAGcucauGuCCu -3'
miRNA:   3'- -GGCACACGGuCGugGgGUUCuu---CuGG- -5'
13995 5' -54.9 NC_003521.1 + 70797 0.67 0.968168
Target:  5'- aUCGUGgacGCaCAGCGgCCCGAaGAGGCg -3'
miRNA:   3'- -GGCACa--CG-GUCGUgGGGUUcUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 213413 0.67 0.968168
Target:  5'- aCGcUG-GUCAGCACCCgCGAGcAGAUg -3'
miRNA:   3'- gGC-ACaCGGUCGUGGG-GUUCuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 115120 0.67 0.964788
Target:  5'- gUCGUGaccGCCGGCGuCUCCAcuacgucGGAcaAGGCCa -3'
miRNA:   3'- -GGCACa--CGGUCGU-GGGGU-------UCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 80144 0.67 0.961842
Target:  5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3'
miRNA:   3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 206545 0.67 0.961842
Target:  5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3'
miRNA:   3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5'
13995 5' -54.9 NC_003521.1 + 138616 0.67 0.965105
Target:  5'- -gGUGUGCCAgGUAgUCUcGGAAGACg -3'
miRNA:   3'- ggCACACGGU-CGUgGGGuUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 87727 0.67 0.965105
Target:  5'- cCCGguugagGUGCCAGacgaAgCCCGAGAccagcugcGGACa -3'
miRNA:   3'- -GGCa-----CACGGUCg---UgGGGUUCU--------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 133337 0.67 0.965105
Target:  5'- aCCaGUGUGCUcugGGCGCCggaCGuGGAGAUCa -3'
miRNA:   3'- -GG-CACACGG---UCGUGGg--GUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 149658 0.67 0.965105
Target:  5'- cCUG-GUGCgGGCugCCCGAcaucguGGGCCc -3'
miRNA:   3'- -GGCaCACGgUCGugGGGUUcu----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 50291 0.67 0.968168
Target:  5'- gCCGcUGcUGCCGccGCACCucgcuccucagCCAGGGAGGCa -3'
miRNA:   3'- -GGC-AC-ACGGU--CGUGG-----------GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 167070 0.67 0.958372
Target:  5'- gCCG-GUGCCGGC-CCaCAuguAGAAGAgCa -3'
miRNA:   3'- -GGCaCACGGUCGuGGgGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 121604 0.67 0.958372
Target:  5'- gCGUGcucaaccugcUGCCgGGCAagaCCGAGAAGAUCa -3'
miRNA:   3'- gGCAC----------ACGG-UCGUgg-GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 681 0.67 0.958372
Target:  5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3'
miRNA:   3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 11834 0.67 0.956189
Target:  5'- uCCGUGcUGCCGGUccugcgccGCCCgCGcaccuccucggacgaGGAGGACUc -3'
miRNA:   3'- -GGCAC-ACGGUCG--------UGGG-GU---------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 39605 0.67 0.954692
Target:  5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3'
miRNA:   3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 25383 0.67 0.954692
Target:  5'- cCUG-GcGCCAGCACCCgCGgcucugcuucacGGAGGGCUc -3'
miRNA:   3'- -GGCaCaCGGUCGUGGG-GU------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 24615 0.67 0.954692
Target:  5'- gCGUGUGCCAGgaggACCCCGcgccGGugCu -3'
miRNA:   3'- gGCACACGGUCg---UGGGGUucu-UCugG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.