miRNA display CGI


Results 141 - 160 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 87727 0.67 0.965105
Target:  5'- cCCGguugagGUGCCAGacgaAgCCCGAGAccagcugcGGACa -3'
miRNA:   3'- -GGCa-----CACGGUCg---UgGGGUUCU--------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 138616 0.67 0.965105
Target:  5'- -gGUGUGCCAgGUAgUCUcGGAAGACg -3'
miRNA:   3'- ggCACACGGU-CGUgGGGuUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 115120 0.67 0.964788
Target:  5'- gUCGUGaccGCCGGCGuCUCCAcuacgucGGAcaAGGCCa -3'
miRNA:   3'- -GGCACa--CGGUCGU-GGGGU-------UCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 206545 0.67 0.961842
Target:  5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3'
miRNA:   3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5'
13995 5' -54.9 NC_003521.1 + 80144 0.67 0.961842
Target:  5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3'
miRNA:   3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148980 0.67 0.961842
Target:  5'- uCCGcGUGCUGGCGCgcaccuucacgCCCGuccAGAuccAGACCg -3'
miRNA:   3'- -GGCaCACGGUCGUG-----------GGGU---UCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 136589 0.67 0.961842
Target:  5'- cCUG-GUGCUcgaucacucGGCACUCUcgugcGAGGAGGCCg -3'
miRNA:   3'- -GGCaCACGG---------UCGUGGGG-----UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111720 0.67 0.961842
Target:  5'- uCCGUGcGCCGGCACgCCAcccacaGCCu -3'
miRNA:   3'- -GGCACaCGGUCGUGgGGUucuuc-UGG- -5'
13995 5' -54.9 NC_003521.1 + 223867 0.67 0.971034
Target:  5'- uUCGUGcUGCCAGCGaauCCCCGAcGGuaacGGCg -3'
miRNA:   3'- -GGCAC-ACGGUCGU---GGGGUU-CUu---CUGg -5'
13995 5' -54.9 NC_003521.1 + 160730 0.67 0.968168
Target:  5'- aUCGUGgucgcgccGUCGGCACCCCcgauGAGcaGAGACa -3'
miRNA:   3'- -GGCACa-------CGGUCGUGGGG----UUC--UUCUGg -5'
13995 5' -54.9 NC_003521.1 + 90547 0.67 0.968168
Target:  5'- cCCGcGa--CAGCACCCaCGAGAGG-CCg -3'
miRNA:   3'- -GGCaCacgGUCGUGGG-GUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 119799 0.67 0.971034
Target:  5'- aCGag-GUCGGCGCCgCCGAGGAGGuCUg -3'
miRNA:   3'- gGCacaCGGUCGUGG-GGUUCUUCU-GG- -5'
13995 5' -54.9 NC_003521.1 + 165038 0.67 0.971034
Target:  5'- -gGUGcUGCCGcggcgucuGCACCUgGAGgcGGCCu -3'
miRNA:   3'- ggCAC-ACGGU--------CGUGGGgUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 40743 0.67 0.971034
Target:  5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3'
miRNA:   3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 194282 0.67 0.968168
Target:  5'- cCCGgcgcgagGCCcugguGCGCCUgGAGAAGACg -3'
miRNA:   3'- -GGCaca----CGGu----CGUGGGgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 102797 0.67 0.970195
Target:  5'- cCCGUGcGCCGgcagcgacgcacgcGCACCucgacgCCGAGAucGACCu -3'
miRNA:   3'- -GGCACaCGGU--------------CGUGG------GGUUCUu-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 74698 0.67 0.968168
Target:  5'- gCCGaccUGCCGGcCGCCCUgAAGcAGGCCc -3'
miRNA:   3'- -GGCac-ACGGUC-GUGGGG-UUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 220041 0.66 0.982642
Target:  5'- cUCGUG-GCCcgacAGCGCCaacgCCAGGAAGgacagcACCa -3'
miRNA:   3'- -GGCACaCGG----UCGUGG----GGUUCUUC------UGG- -5'
13995 5' -54.9 NC_003521.1 + 72635 0.66 0.982642
Target:  5'- aCCGUGcuggcggGCCAGCAgCUCAucacGcAGACUa -3'
miRNA:   3'- -GGCACa------CGGUCGUgGGGUu---CuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111031 0.66 0.982642
Target:  5'- aCGgcu-UCAGCGCCCCAGGc-GACCc -3'
miRNA:   3'- gGCacacGGUCGUGGGGUUCuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.