miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 130882 0.68 0.941012
Target:  5'- aCCGUGUGCCuGCGgcgacagaucgaccCCCCGuc-AGGCa -3'
miRNA:   3'- -GGCACACGGuCGU--------------GGGGUucuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 214651 0.68 0.941909
Target:  5'- aCCGUGaugGCCgucuccagcagcAGCAgUCCGuagacgcGGAAGACCa -3'
miRNA:   3'- -GGCACa--CGG------------UCGUgGGGU-------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 211739 0.68 0.941909
Target:  5'- -aGUGcGCCAccaugagcucgauGC-CCaCCAGGAAGGCCa -3'
miRNA:   3'- ggCACaCGGU-------------CGuGG-GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 13941 0.68 0.942354
Target:  5'- gCCGUGgUGCCcccgcAGCugCCCucgcuGGAgcccugauGGGCCu -3'
miRNA:   3'- -GGCAC-ACGG-----UCGugGGGu----UCU--------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 21551 0.68 0.942354
Target:  5'- cCCGcucaUGUGCCAGC-CCCU--GcGGGCCc -3'
miRNA:   3'- -GGC----ACACGGUCGuGGGGuuCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 186524 0.68 0.942355
Target:  5'- gCgGUGUcGCCAGCggggGCUCCGuGGGAGGCa -3'
miRNA:   3'- -GgCACA-CGGUCG----UGGGGU-UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 212024 0.68 0.942355
Target:  5'- gCCGUGUGCCaAGUGgCaUGAGAGGGCg -3'
miRNA:   3'- -GGCACACGG-UCGUgGgGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 20289 0.68 0.946686
Target:  5'- gCgGUGgaucucGCCGGCGCCaugcagcaCCAGGAGG-CCa -3'
miRNA:   3'- -GgCACa-----CGGUCGUGG--------GGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 37479 0.68 0.946686
Target:  5'- aCCGUGgUGCCgcagGGCACCCCcauc--GCCa -3'
miRNA:   3'- -GGCAC-ACGG----UCGUGGGGuucuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 55957 0.68 0.949587
Target:  5'- aCCGUGUGCa---GCCCCAccacgccgaugugcAGggG-CCg -3'
miRNA:   3'- -GGCACACGgucgUGGGGU--------------UCuuCuGG- -5'
13995 5' -54.9 NC_003521.1 + 152957 0.68 0.950798
Target:  5'- aCGgccugGCCAGCGCCUgCGAGGAcACCu -3'
miRNA:   3'- gGCaca--CGGUCGUGGG-GUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 44742 0.68 0.950798
Target:  5'- uUCGUGcUGCUGG-ACgCCGAGAcGGACCg -3'
miRNA:   3'- -GGCAC-ACGGUCgUGgGGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 127684 0.68 0.950798
Target:  5'- uCCGUGuUGCCGuGCACCagcacguccaCCAgguAGAAGAgCu -3'
miRNA:   3'- -GGCAC-ACGGU-CGUGG----------GGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 57614 0.68 0.950798
Target:  5'- ---cGUGCCGucGCGCUCCAGGcacgucacgGGGGCCg -3'
miRNA:   3'- ggcaCACGGU--CGUGGGGUUC---------UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 33476 0.68 0.950798
Target:  5'- gCCGgccGcGCCGacccgagggacGCGCCCCccGAAGACCu -3'
miRNA:   3'- -GGCa--CaCGGU-----------CGUGGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 117400 0.68 0.950798
Target:  5'- gCGcUGUGCUGGCACCggguGGAGGGCg -3'
miRNA:   3'- gGC-ACACGGUCGUGGggu-UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 36213 0.68 0.950798
Target:  5'- aCGcUGUcGCCAcauGgACCCCGAGcAGGACUa -3'
miRNA:   3'- gGC-ACA-CGGU---CgUGGGGUUC-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 198987 0.68 0.952381
Target:  5'- aCCGUcaGCCucagcgucugauguuGGCACUCCA--GAGACCa -3'
miRNA:   3'- -GGCAcaCGG---------------UCGUGGGGUucUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 137919 0.67 0.953546
Target:  5'- cCCGUG-GCUGGcgggucgcgguuccCugCCCGAGGAGcCCg -3'
miRNA:   3'- -GGCACaCGGUC--------------GugGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 239832 0.67 0.954692
Target:  5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3'
miRNA:   3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.