Results 101 - 120 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 239832 | 0.67 | 0.954692 |
Target: 5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3' miRNA: 3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 39605 | 0.67 | 0.954692 |
Target: 5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3' miRNA: 3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 25383 | 0.67 | 0.954692 |
Target: 5'- cCUG-GcGCCAGCACCCgCGgcucugcuucacGGAGGGCUc -3' miRNA: 3'- -GGCaCaCGGUCGUGGG-GU------------UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 24615 | 0.67 | 0.954692 |
Target: 5'- gCGUGUGCCAGgaggACCCCGcgccGGugCu -3' miRNA: 3'- gGCACACGGUCg---UGGGGUucu-UCugG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 11834 | 0.67 | 0.956189 |
Target: 5'- uCCGUGcUGCCGGUccugcgccGCCCgCGcaccuccucggacgaGGAGGACUc -3' miRNA: 3'- -GGCAC-ACGGUCG--------UGGG-GU---------------UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 167801 | 0.67 | 0.958372 |
Target: 5'- uCCGUcaGCCAGCACCaCCGcgcaugucagccAGAgcaggagcggccAGGCCc -3' miRNA: 3'- -GGCAcaCGGUCGUGG-GGU------------UCU------------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 213447 | 0.67 | 0.958372 |
Target: 5'- cCCGUG-GCCuGGCcCCCCGGcuGGAG-CCu -3' miRNA: 3'- -GGCACaCGG-UCGuGGGGUU--CUUCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 121604 | 0.67 | 0.958372 |
Target: 5'- gCGUGcucaaccugcUGCCgGGCAagaCCGAGAAGAUCa -3' miRNA: 3'- gGCAC----------ACGG-UCGUgg-GGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 167070 | 0.67 | 0.958372 |
Target: 5'- gCCG-GUGCCGGC-CCaCAuguAGAAGAgCa -3' miRNA: 3'- -GGCaCACGGUCGuGGgGU---UCUUCUgG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 681 | 0.67 | 0.958372 |
Target: 5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3' miRNA: 3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 200908 | 0.67 | 0.958372 |
Target: 5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3' miRNA: 3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 59606 | 0.67 | 0.958372 |
Target: 5'- aCGguaGUGgCGGCgGCCCCGGcGgcGACCg -3' miRNA: 3'- gGCa--CACgGUCG-UGGGGUU-CuuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 140592 | 0.67 | 0.958372 |
Target: 5'- uUCGcG-GCCGGCgagacgcuccGCUUCGAGGAGGCCg -3' miRNA: 3'- -GGCaCaCGGUCG----------UGGGGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 87483 | 0.67 | 0.960478 |
Target: 5'- ----cUGCCAGCugcugaacacguuCCCCGuGAAGGCCg -3' miRNA: 3'- ggcacACGGUCGu------------GGGGUuCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 159957 | 0.67 | 0.961841 |
Target: 5'- aCCGaggaGUGCCAGCuacccaGCCUCAAGAucuucaucGCCg -3' miRNA: 3'- -GGCa---CACGGUCG------UGGGGUUCUuc------UGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 136589 | 0.67 | 0.961842 |
Target: 5'- cCUG-GUGCUcgaucacucGGCACUCUcgugcGAGGAGGCCg -3' miRNA: 3'- -GGCaCACGG---------UCGUGGGG-----UUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 148980 | 0.67 | 0.961842 |
Target: 5'- uCCGcGUGCUGGCGCgcaccuucacgCCCGuccAGAuccAGACCg -3' miRNA: 3'- -GGCaCACGGUCGUG-----------GGGU---UCU---UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 80144 | 0.67 | 0.961842 |
Target: 5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3' miRNA: 3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 206545 | 0.67 | 0.961842 |
Target: 5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3' miRNA: 3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 111720 | 0.67 | 0.961842 |
Target: 5'- uCCGUGcGCCGGCACgCCAcccacaGCCu -3' miRNA: 3'- -GGCACaCGGUCGUGgGGUucuuc-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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