miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 206545 0.67 0.961842
Target:  5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3'
miRNA:   3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5'
13995 5' -54.9 NC_003521.1 + 80144 0.67 0.961842
Target:  5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3'
miRNA:   3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111720 0.67 0.961842
Target:  5'- uCCGUGcGCCGGCACgCCAcccacaGCCu -3'
miRNA:   3'- -GGCACaCGGUCGUGgGGUucuuc-UGG- -5'
13995 5' -54.9 NC_003521.1 + 159957 0.67 0.961841
Target:  5'- aCCGaggaGUGCCAGCuacccaGCCUCAAGAucuucaucGCCg -3'
miRNA:   3'- -GGCa---CACGGUCG------UGGGGUUCUuc------UGG- -5'
13995 5' -54.9 NC_003521.1 + 87483 0.67 0.960478
Target:  5'- ----cUGCCAGCugcugaacacguuCCCCGuGAAGGCCg -3'
miRNA:   3'- ggcacACGGUCGu------------GGGGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 59606 0.67 0.958372
Target:  5'- aCGguaGUGgCGGCgGCCCCGGcGgcGACCg -3'
miRNA:   3'- gGCa--CACgGUCG-UGGGGUU-CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 200908 0.67 0.958372
Target:  5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3'
miRNA:   3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167801 0.67 0.958372
Target:  5'- uCCGUcaGCCAGCACCaCCGcgcaugucagccAGAgcaggagcggccAGGCCc -3'
miRNA:   3'- -GGCAcaCGGUCGUGG-GGU------------UCU------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 681 0.67 0.958372
Target:  5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3'
miRNA:   3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 140592 0.67 0.958372
Target:  5'- uUCGcG-GCCGGCgagacgcuccGCUUCGAGGAGGCCg -3'
miRNA:   3'- -GGCaCaCGGUCG----------UGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167070 0.67 0.958372
Target:  5'- gCCG-GUGCCGGC-CCaCAuguAGAAGAgCa -3'
miRNA:   3'- -GGCaCACGGUCGuGGgGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 121604 0.67 0.958372
Target:  5'- gCGUGcucaaccugcUGCCgGGCAagaCCGAGAAGAUCa -3'
miRNA:   3'- gGCAC----------ACGG-UCGUgg-GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 213447 0.67 0.958372
Target:  5'- cCCGUG-GCCuGGCcCCCCGGcuGGAG-CCu -3'
miRNA:   3'- -GGCACaCGG-UCGuGGGGUU--CUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 11834 0.67 0.956189
Target:  5'- uCCGUGcUGCCGGUccugcgccGCCCgCGcaccuccucggacgaGGAGGACUc -3'
miRNA:   3'- -GGCAC-ACGGUCG--------UGGG-GU---------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 39605 0.67 0.954692
Target:  5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3'
miRNA:   3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 24615 0.67 0.954692
Target:  5'- gCGUGUGCCAGgaggACCCCGcgccGGugCu -3'
miRNA:   3'- gGCACACGGUCg---UGGGGUucu-UCugG- -5'
13995 5' -54.9 NC_003521.1 + 226694 0.67 0.954692
Target:  5'- aCGUcacGUGCCAGC-CCUUcGGcGGACCc -3'
miRNA:   3'- gGCA---CACGGUCGuGGGGuUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 239832 0.67 0.954692
Target:  5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3'
miRNA:   3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 25383 0.67 0.954692
Target:  5'- cCUG-GcGCCAGCACCCgCGgcucugcuucacGGAGGGCUc -3'
miRNA:   3'- -GGCaCaCGGUCGUGGG-GU------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 137919 0.67 0.953546
Target:  5'- cCCGUG-GCUGGcgggucgcgguuccCugCCCGAGGAGcCCg -3'
miRNA:   3'- -GGCACaCGGUC--------------GugGGGUUCUUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.