miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 87740 0.69 0.91108
Target:  5'- gCGUGguggGCCccGGCccggGCCCCGgcggcggAGGAGGCCu -3'
miRNA:   3'- gGCACa---CGG--UCG----UGGGGU-------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 88210 0.71 0.858441
Target:  5'- gCCGccugGUGaccaaCCAGgGCgCCGAGGAGGCCa -3'
miRNA:   3'- -GGCa---CAC-----GGUCgUGgGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 88336 0.67 0.968168
Target:  5'- gCCGaa-GCgCAGCgacugACCCCAGGAGGugUa -3'
miRNA:   3'- -GGCacaCG-GUCG-----UGGGGUUCUUCugG- -5'
13995 5' -54.9 NC_003521.1 + 88673 0.68 0.933023
Target:  5'- uCgGUGgGCCGGCGgCCCGGcucGggGACa -3'
miRNA:   3'- -GgCACaCGGUCGUgGGGUU---CuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 90020 0.66 0.976204
Target:  5'- uUCG-GU-CCAGCGCCCCcuGgcGGCUc -3'
miRNA:   3'- -GGCaCAcGGUCGUGGGGuuCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 90547 0.67 0.968168
Target:  5'- cCCGcGa--CAGCACCCaCGAGAGG-CCg -3'
miRNA:   3'- -GGCaCacgGUCGUGGG-GUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 92682 0.66 0.979396
Target:  5'- cUCGgcgagGUGCCGGguCCCUggGAcacgaugaggucccaGGAUCc -3'
miRNA:   3'- -GGCa----CACGGUCguGGGGuuCU---------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 94190 0.72 0.775149
Target:  5'- gUCGUG-GCCGGgGCCCUu-GAAGACg -3'
miRNA:   3'- -GGCACaCGGUCgUGGGGuuCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 94630 0.67 0.968168
Target:  5'- cCCGUGagacgaugaUGCCAGCucgaUCCGGGAccGCCg -3'
miRNA:   3'- -GGCAC---------ACGGUCGug--GGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 99823 0.69 0.899638
Target:  5'- aCGUGcuggGCCuuGUugCUgGAGAGGGCCa -3'
miRNA:   3'- gGCACa---CGGu-CGugGGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 100722 0.68 0.932532
Target:  5'- gCUGUGUcgcaagcGCUAccagaugauGCACCCCGAGcuGGGCCu -3'
miRNA:   3'- -GGCACA-------CGGU---------CGUGGGGUUCu-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 100856 0.66 0.978518
Target:  5'- -gGUGUuCCacgAGCGCCUCAAGAGcGCCc -3'
miRNA:   3'- ggCACAcGG---UCGUGGGGUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 101226 0.66 0.975962
Target:  5'- aCCGUguuccugGUGCCgcGGCGCCaCGGcAAGACCu -3'
miRNA:   3'- -GGCA-------CACGG--UCGUGGgGUUcUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 102472 0.68 0.937801
Target:  5'- aCCGUGUGCuUAGagaGgCCCGAGAc-GCCg -3'
miRNA:   3'- -GGCACACG-GUCg--UgGGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 102705 0.74 0.709238
Target:  5'- gCG-GUGCCAGguCUCgGAGAAGACg -3'
miRNA:   3'- gGCaCACGGUCguGGGgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 102797 0.67 0.970195
Target:  5'- cCCGUGcGCCGgcagcgacgcacgcGCACCucgacgCCGAGAucGACCu -3'
miRNA:   3'- -GGCACaCGGU--------------CGUGG------GGUUCUu-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 104200 0.69 0.91108
Target:  5'- cCCGUG-GCCGauuacgugcugcuGCAgCCCAGcGAGGACg -3'
miRNA:   3'- -GGCACaCGGU-------------CGUgGGGUU-CUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 105051 0.75 0.640293
Target:  5'- cCCGUGcGCgAGCAgCCCCAGGGGcGAUCc -3'
miRNA:   3'- -GGCACaCGgUCGU-GGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 105258 0.66 0.973711
Target:  5'- aCgGUGUGaCGGCACCCaAAGAcaaACCg -3'
miRNA:   3'- -GgCACACgGUCGUGGGgUUCUuc-UGG- -5'
13995 5' -54.9 NC_003521.1 + 109850 0.67 0.968168
Target:  5'- aCCGUGcucacUGCCccCACCgCGGuGAAGGCCu -3'
miRNA:   3'- -GGCAC-----ACGGucGUGGgGUU-CUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.