miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 110128 0.7 0.893297
Target:  5'- cCCGUuuuucaGUGCUuucacggcGUACCCguGGAAGGCCg -3'
miRNA:   3'- -GGCA------CACGGu-------CGUGGGguUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111031 0.66 0.982642
Target:  5'- aCGgcu-UCAGCGCCCCAGGc-GACCc -3'
miRNA:   3'- gGCacacGGUCGUGGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 111279 0.73 0.766028
Target:  5'- cCCGccGUGCCAGCGCCgCCGcgauGGAGaACUg -3'
miRNA:   3'- -GGCa-CACGGUCGUGG-GGUu---CUUC-UGG- -5'
13995 5' -54.9 NC_003521.1 + 111720 0.67 0.961842
Target:  5'- uCCGUGcGCCGGCACgCCAcccacaGCCu -3'
miRNA:   3'- -GGCACaCGGUCGUGgGGUucuuc-UGG- -5'
13995 5' -54.9 NC_003521.1 + 111759 0.66 0.977842
Target:  5'- aCGUGgagGCCAugcacaggugcugcGCGCgCUCAAGAAcacGGCCg -3'
miRNA:   3'- gGCACa--CGGU--------------CGUG-GGGUUCUU---CUGG- -5'
13995 5' -54.9 NC_003521.1 + 112486 0.71 0.818787
Target:  5'- cCCGUGgGCCuGUACCUgcccGAGGACCg -3'
miRNA:   3'- -GGCACaCGGuCGUGGGguu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 113057 0.66 0.973711
Target:  5'- gCCGUGcuCCAGCACCuuCCGGGcuacGAGGCg -3'
miRNA:   3'- -GGCACacGGUCGUGG--GGUUC----UUCUGg -5'
13995 5' -54.9 NC_003521.1 + 114705 0.7 0.872998
Target:  5'- aCGUGUaCCGGCACgaCGAGAucGACCg -3'
miRNA:   3'- gGCACAcGGUCGUGggGUUCUu-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 115120 0.67 0.964788
Target:  5'- gUCGUGaccGCCGGCGuCUCCAcuacgucGGAcaAGGCCa -3'
miRNA:   3'- -GGCACa--CGGUCGU-GGGGU-------UCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 115647 0.77 0.513113
Target:  5'- cUCGUgcGUGUCGGCGCCCCAguggcgggugaAGAAGGCg -3'
miRNA:   3'- -GGCA--CACGGUCGUGGGGU-----------UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 115740 0.7 0.893297
Target:  5'- gCCGUugcggGCCAGguCCUCGgggaagggaucAGAAGGCCg -3'
miRNA:   3'- -GGCAca---CGGUCguGGGGU-----------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 117037 0.66 0.982642
Target:  5'- aCGUcaagGCCAGUguuuCgCCCGAGgcGGCCg -3'
miRNA:   3'- gGCAca--CGGUCGu---G-GGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 117285 0.68 0.936391
Target:  5'- gCCGUGgUGCCGGCuccccucacgcuGCCCCAcgacGGAguuuauuuacccaaAGACg -3'
miRNA:   3'- -GGCAC-ACGGUCG------------UGGGGU----UCU--------------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 117400 0.68 0.950798
Target:  5'- gCGcUGUGCUGGCACCggguGGAGGGCg -3'
miRNA:   3'- gGC-ACACGGUCGUGGggu-UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 118947 0.68 0.933023
Target:  5'- cCCGUcaggGCCAGCG-CCCGAGAcAGuCCc -3'
miRNA:   3'- -GGCAca--CGGUCGUgGGGUUCU-UCuGG- -5'
13995 5' -54.9 NC_003521.1 + 119799 0.67 0.971034
Target:  5'- aCGag-GUCGGCGCCgCCGAGGAGGuCUg -3'
miRNA:   3'- gGCacaCGGUCGUGG-GGUUCUUCU-GG- -5'
13995 5' -54.9 NC_003521.1 + 119981 0.67 0.965105
Target:  5'- gCCGaGU-CCAGCAUggcaCCCGAGGAGgauACCg -3'
miRNA:   3'- -GGCaCAcGGUCGUG----GGGUUCUUC---UGG- -5'
13995 5' -54.9 NC_003521.1 + 121024 0.69 0.91166
Target:  5'- aCCGUGUcGCCccgcuGGCGCCggAAGGuGGACCg -3'
miRNA:   3'- -GGCACA-CGG-----UCGUGGggUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 121068 0.66 0.978518
Target:  5'- -gGUGUGCUGGUACUCCAGcuu-GCCg -3'
miRNA:   3'- ggCACACGGUCGUGGGGUUcuucUGG- -5'
13995 5' -54.9 NC_003521.1 + 121604 0.67 0.958372
Target:  5'- gCGUGcucaaccugcUGCCgGGCAagaCCGAGAAGAUCa -3'
miRNA:   3'- gGCAC----------ACGG-UCGUgg-GGUUCUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.