miRNA display CGI


Results 101 - 120 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 126124 0.67 0.971034
Target:  5'- cUCGUcGUGCCGGUACacgugcaUgGGGAAGACg -3'
miRNA:   3'- -GGCA-CACGGUCGUGg------GgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 126308 0.67 0.96542
Target:  5'- cCCGUGgcggcggugggcacgGCggccacgacggaCAGCACCCagauGAAGGCCa -3'
miRNA:   3'- -GGCACa--------------CG------------GUCGUGGGguu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 127684 0.68 0.950798
Target:  5'- uCCGUGuUGCCGuGCACCagcacguccaCCAgguAGAAGAgCu -3'
miRNA:   3'- -GGCAC-ACGGU-CGUGG----------GGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 129068 0.71 0.850872
Target:  5'- aCCGUGUGCaUGGC-CUCCAcguuGAGGAUCu -3'
miRNA:   3'- -GGCACACG-GUCGuGGGGUu---CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130178 0.75 0.620424
Target:  5'- gCCGUgaccGUGCCGGCGCCCggCGAGAu-GCCg -3'
miRNA:   3'- -GGCA----CACGGUCGUGGG--GUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 130504 0.69 0.927507
Target:  5'- gCCGcGUcaugaugGCCcugcGGCugCCCGAGcAGACCg -3'
miRNA:   3'- -GGCaCA-------CGG----UCGugGGGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130882 0.68 0.941012
Target:  5'- aCCGUGUGCCuGCGgcgacagaucgaccCCCCGuc-AGGCa -3'
miRNA:   3'- -GGCACACGGuCGU--------------GGGGUucuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 132289 0.69 0.92802
Target:  5'- aCCGUGUGCC---GCCaCGuGGAGGCCa -3'
miRNA:   3'- -GGCACACGGucgUGGgGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 133337 0.67 0.965105
Target:  5'- aCCaGUGUGCUcugGGCGCCggaCGuGGAGAUCa -3'
miRNA:   3'- -GG-CACACGG---UCGUGGg--GUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 134611 0.7 0.865819
Target:  5'- aUGUGcGCCGcGCACUCgGAGAuGGCCa -3'
miRNA:   3'- gGCACaCGGU-CGUGGGgUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 135909 0.66 0.982642
Target:  5'- cCCGUcuuuGUGCCGGCcucggccacgGCCgCGGGAuGugCg -3'
miRNA:   3'- -GGCA----CACGGUCG----------UGGgGUUCUuCugG- -5'
13995 5' -54.9 NC_003521.1 + 136589 0.67 0.961842
Target:  5'- cCUG-GUGCUcgaucacucGGCACUCUcgugcGAGGAGGCCg -3'
miRNA:   3'- -GGCaCACGG---------UCGUGGGG-----UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 137139 0.69 0.917338
Target:  5'- aCCGUcGUGguucaUCAGCACCuucggCCAcacGGAGGGCCa -3'
miRNA:   3'- -GGCA-CAC-----GGUCGUGG-----GGU---UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 137919 0.67 0.953546
Target:  5'- cCCGUG-GCUGGcgggucgcgguuccCugCCCGAGGAGcCCg -3'
miRNA:   3'- -GGCACaCGGUC--------------GugGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 138235 0.71 0.827066
Target:  5'- aCGUG-GCCAGCgccaGCCCCGAGAcgcAGuuCu -3'
miRNA:   3'- gGCACaCGGUCG----UGGGGUUCU---UCugG- -5'
13995 5' -54.9 NC_003521.1 + 138616 0.67 0.965105
Target:  5'- -gGUGUGCCAgGUAgUCUcGGAAGACg -3'
miRNA:   3'- ggCACACGGU-CGUgGGGuUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 140592 0.67 0.958372
Target:  5'- uUCGcG-GCCGGCgagacgcuccGCUUCGAGGAGGCCg -3'
miRNA:   3'- -GGCaCaCGGUCG----------UGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 141802 0.71 0.818787
Target:  5'- cCCGga-GCCGGCGCCaucgucuaCAAGAcGACCg -3'
miRNA:   3'- -GGCacaCGGUCGUGGg-------GUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148198 0.7 0.865819
Target:  5'- uCCGUGUcaugacGUCAGCGaUCCGGcGAGGACCg -3'
miRNA:   3'- -GGCACA------CGGUCGUgGGGUU-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148434 0.69 0.90576
Target:  5'- gCCGc--GCCGGCgGCUCCAGGGGuGGCCg -3'
miRNA:   3'- -GGCacaCGGUCG-UGGGGUUCUU-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.